PGSC0003DMG400031777 (Solanum tuberosum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PGSC0003DMG400031777 T222224_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.715 0.632
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.715 0.632
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD

HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.695 0.579
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD

HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.695 0.579
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN

NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.668 0.579
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD

HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.668 0.579
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA

TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.668 0.579
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN

NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
0.645 0.491
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400081296 Homeodomain 14 70

Links

Other Homeodomain family TFs
Other Solanum tuberosum TFs

211 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
23216_YHR006W Saccharomyces bayanus 23216_YHR006W I 0.000
5271_YDR463W Saccharomyces mikatae 5271_YDR463W I 0.000
5542_YDR463W Saccharomyces paradoxus 5542_YDR463W I 0.000
5582_YDR463W Saccharomyces bayanus 5582_YDR463W I 0.000
AACERI_AaceriAFR461C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAFR461C I 0.000
AACERI_AaceriAFR531W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAFR531W I 0.000
AGOS_AFR461C Ashbya gossypii AGOS_AFR461C I 0.000
AGOS_AFR531W Ashbya gossypii AGOS_AFR531W I 0.000
CAGL0E04312g Candida glabrata CAGL0E04312g I 0.000
CORT_0D02790 Candida orthopsilosis CORT_0D02790 I 0.000
DEHA2E16478g Debaryomyces hansenii DEHA2E16478g I 0.000
Ecym_1475 Eremothecium cymbalariae Ecym_1475 I 0.000
estExt_fgenesh1_pg.C_chr_1.20297 Pichia stipitis estExt_fgenesh1_pg.C_chr_1.20297 I 0.000
GNLVRS01_PISO0M20868g Millerozyma farinosa GNLVRS01_PISO0M20868g I 0.000
GNLVRS01_PISO0N21111g Millerozyma farinosa GNLVRS01_PISO0N21111g I 0.000
KAFR_0A06720 Kazachstania africana KAFR_0A06720 I 0.000
KAFR_0C05710 Kazachstania africana KAFR_0C05710 I 0.000
KLLA0_F10109g Kluyveromyces lactis KLLA0_F10109g I 0.000
KLTH0G05104g Kluyveromyces thermotolerans KLTH0G05104g I 0.000
KLTH0G05104g Lachancea thermotolerans KLTH0G05104g I 0.000
KNAG_0B03350 Kazachstania naganishii KNAG_0B03350 I 0.000
KNAG_0C06030 Kazachstania naganishii KNAG_0C06030 I 0.000
Kpol_1023p63 Vanderwaltozyma polyspora Kpol_1023p63 I 0.000
KUCA_T00002785001 Kuraishia capsulata KUCA_T00002785001 I 0.000
Kwal_18337 Kluyveromyces waltii Kwal_18337 I 0.000
NCAS_0A07900 Naumovozyma castellii NCAS_0A07900 N 0.000
NDAI_0C00690 Naumovozyma dairenensis NDAI_0C00690 I 0.000
PICST_66679 Scheffersomyces stipitis PICST_66679 I 0.000
SAKL0G06292g Lachancea kluyveri SAKL0G06292g I 0.000
Scas_Contig660.12 Saccharomyces castellii Scas_Contig660.12 N 0.000
SKUD_206715 Saccharomyces kudriavzevii SKUD_206715 I 0.000
SU7_1409 Saccharomyces arboricola SU7_1409 I 0.000
SU7_2774 Saccharomyces arboricola SU7_2774 I 0.000
TDEL_0A04530 Torulaspora delbrueckii TDEL_0A04530 I 0.000
TPHA_0K00210 Tetrapisispora phaffii TPHA_0K00210 I 0.000
YALI0_E24937g Yarrowia lipolytica YALI0_E24937g N 0.000
STP1 Saccharomyces cerevisiae YDR463W D 0.000