PGSC0003DMG402012439 (Solanum tuberosum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PGSC0003DMG402012439 T222232_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.667 0.596
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.667 0.596
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD

HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.667 0.596
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD

HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.667 0.596
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN

NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
0.624 0.491
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN

NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.615 0.544
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD

HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.615 0.544
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA

TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.615 0.544
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400032390 Homeodomain 15 71

Links

Other Homeodomain family TFs
Other Solanum tuberosum TFs

167 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.864
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.776
TCM_031644 Theobroma cacao TCM_031644 I 0.774
mgf025174m Mimulus guttatus mgf025174m I 0.758
MDP0000909160 Malus domestica MDP0000909160 I 0.742
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.742
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.739
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.725
mgf013301m Mimulus guttatus mgf013301m I 0.725
MDP0000146339 Malus domestica MDP0000146339 I 0.723
Pm011328 Prunus mume Pm011328 I 0.720
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.720
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.718
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.715
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.706
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.706
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.706
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.704
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.702
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.702
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.700
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.695
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.695
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.695
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.689
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.684
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.681
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.680
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.678
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.674
29983.m003123 Ricinus communis 29983.m003123 I 0.673
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.673
HAT7 Arabidopsis thaliana AT5G15150 I 0.669
Bra006285 Brassica rapa Bra006285 I 0.669
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.669
Bo2g012410 Brassica oleracea Bo2g012410 I 0.669
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.669
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.669
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.669
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.669
Bra023506 Brassica rapa Bra023506 I 0.669
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.669
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.669
Bo3g010120 Brassica oleracea Bo3g010120 I 0.669
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.668
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.668
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.667
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.667
Pm015861 Prunus mume Pm015861 I 0.667
29822.m003500 Ricinus communis 29822.m003500 I 0.667
MDP0000124827 Malus domestica MDP0000124827 I 0.667
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.667
Ca_10527 Cicer arietinum Ca_10527 I 0.667
MDP0000737128 Malus domestica MDP0000737128 I 0.667
Cla010510 Citrullus lanatus Cla010510 I 0.667
PK20392.1 Cannabis sativa PK20392.1 D 0.667
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.667
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.667
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.667
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.667
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.667
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.667
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.667
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.667
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.667
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.667
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.667
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.667
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.667
Bra039135 Brassica rapa Bra039135 I 0.667
Bo9g165360 Brassica oleracea Bo9g165360 I 0.667
Bo1g158730 Brassica oleracea Bo1g158730 I 0.667
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.667
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.667
Bra008717 Brassica rapa Bra008717 I 0.667
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.667
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.667
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.667
TCM_018470 Theobroma cacao TCM_018470 I 0.667
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.667
MDP0000311522 Malus domestica MDP0000311522 I 0.665
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.664
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.664
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.663
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.662
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.658
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.657
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I 0.649
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.646
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.643
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.643
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.637
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.637
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.633
Bo12274s010 Brassica oleracea Bo12274s010 I 0.633
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.632
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.632
Si030983m.g Setaria italica Si030983m.g I 0.632
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.632
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.632
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.632
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.632
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.631
Pm018314 Prunus mume Pm018314 I 0.631
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.624
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.624
Bo4g034490 Brassica oleracea Bo4g034490 I 0.624
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.624
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.624
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.624
Bra005259 Brassica rapa Bra005259 I 0.624
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.620
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.620
SapurV1A.0118s0340 Salix purpurea SapurV1A.0118s0340 N 0.619
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.619
Cla018641 Citrullus lanatus Cla018641 I 0.619
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.618
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.616
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.616
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.616
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.616
mgf022748m Mimulus guttatus mgf022748m I 0.616
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.616
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.615
MDP0000738604 Malus domestica MDP0000738604 I 0.615
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.615
Bo9g181720 Brassica oleracea Bo9g181720 I 0.615
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.615
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.615
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.615
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.615
TCM_022391 Theobroma cacao TCM_022391 I 0.615
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.615
Cla018017 Citrullus lanatus Cla018017 I 0.615
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.615
mgf019824m Mimulus guttatus mgf019824m I 0.615
29815.m000499 Ricinus communis 29815.m000499 I 0.615
Pm026270 Prunus mume Pm026270 I 0.615
Bo3g002560 Brassica oleracea Bo3g002560 I 0.615
MDP0000134241 Malus domestica MDP0000134241 I 0.615
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.615
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.615
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.615
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.615
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.615
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.615
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.615
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.615
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.615
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.615
Bra009510 Brassica rapa Bra009510 I 0.615
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.615
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.615
MDP0000119544 Malus domestica MDP0000119544 I 0.615
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.615
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.611
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.611
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.611
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.611
Bo2g042250 Brassica oleracea Bo2g042250 I 0.606
Bra022687 Brassica rapa Bra022687 I 0.606
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.604
Bra028820 Brassica rapa Bra028820 I 0.603
PK15535.1 Cannabis sativa PK15535.1 I 0.603
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.603
Bo2g005230 Brassica oleracea Bo2g005230 I 0.603
Ciclev10016895m.g Citrus clementina Ciclev10016895m.g I 0.600