POPTR_0001s28350 (Populus trichocarpa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 POPTR_0001s28350 T222470_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK25011.1
M01253_2.00
Cannabis sativa
NNWYRMDBNN

NNVHKYRWNN
PBM
Lambert et al.(2019)
pTH11258
0.645 0.825
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s28350.1 Homeodomain 19 75
POPTR_0001s28350.2 Homeodomain 19 75

Links

Other Homeodomain family TFs
Other Populus trichocarpa TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SapurV1A.0106s0340 Salix purpurea SapurV1A.0106s0340 I 0.854
POPTR_0009s07600 Populus trichocarpa POPTR_0009s07600 I 0.853
TCM_040945 Theobroma cacao TCM_040945 I 0.797
SapurV1A.0042s0570 Salix purpurea SapurV1A.0042s0570 I 0.789
Gorai.004G014700 Gossypium raimondii Gorai.004G014700 I 0.766
Gorai.013G254100 Gossypium raimondii Gorai.013G254100 I 0.746
Aquca_014_00610 Aquilegia coerulea Aquca_014_00610 I 0.691
PK25011.1 Cannabis sativa PK25011.1 D 0.645
Gorai.001G134800 Gossypium raimondii Gorai.001G134800 I 0.636
mgf007720m Mimulus guttatus mgf007720m I 0.634
VIT_06s0009g03530 Vitis vinifera VIT_06s0009g03530 I 0.629
cassava16534.m1 Manihot esculenta cassava16534.m1 I 0.621
Bostr.2983s0116 Boechera stricta Bostr.2983s0116 I 0.620
Cagra.2552s0003 Capsella grandiflora Cagra.2552s0003 I 0.620
Carubv10002996m.g Capsella rubella Carubv10002996m.g I 0.620
mgf000172m Mimulus guttatus mgf000172m I 0.620
Bo9g006450 Brassica oleracea Bo9g006450 I 0.615
Bra034196 Brassica rapa Bra034196 I 0.615
AT4G03250 Arabidopsis thaliana AT4G03250 I 0.614
GLYMA02G44910 Glycine max GLYMA02G44910 I 0.601
GLYMA04G15260 Glycine max GLYMA04G15260 I 0.601
GLYMA14G03850 Glycine max GLYMA14G03850 I 0.601
Cla008712 Citrullus lanatus Cla008712 I 0.601
Cucsa.087050 Cucumis sativus Cucsa.087050 I 0.599
Ciclev10014928m.g Citrus clementina Ciclev10014928m.g I 0.599
orange1.1g010311m.g Citrus sinensis orange1.1g010311m.g I 0.599