CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0002s17680
(
Populus trichocarpa
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
POPTR_0002s17680
T222483_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATHB-7
M02043_2.00
Arabidopsis thaliana
NHWTGATTGN
NCAATCAWDN
PBM
Weirauch et al.(2014)
pTH8090
0.718
0.895
ATHB-7
M06911_2.00
Arabidopsis thaliana
NHYCAATCATTSW
WSAATGATTGRDN
Dap-seq
OMalley et al.(2016)
ATHB7_col_a
0.718
0.895
ATHB-5
M06932_2.00
Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_col_a
0.698
0.632
ATHB-5
M06933_2.00
Arabidopsis thaliana
NYAATMATTN
NAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a
0.698
0.632
ATHB-5
M02684_2.00
Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG
SELEX
Mathelier et al.(2014)
MA0110.2
0.698
0.632
ATHB-5
M10630_2.00
Arabidopsis thaliana
CAATVATTG
CAATBATTG
Transfac
Matys et al.(2006)
P$ATHB5_01
0.698
0.632
ATHB-13
M06900_2.00
Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB13_col_a
0.686
0.632
ATHB-13
M06901_2.00
Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN
Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a
0.686
0.632
ATHB-6
M02040_2.00
Arabidopsis thaliana
HATNATTDN
NHAATNATD
PBM
Weirauch et al.(2014)
pTH7670
0.680
0.632
ATHB-6
M06909_2.00
Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN
Dap-seq
OMalley et al.(2016)
ATHB6_col_a
0.680
0.632
ATHB-6
M06910_2.00
Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN
Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a
0.680
0.632
ATHB-16
M02050_2.00
Arabidopsis thaliana
YAATMATT
AATKATTR
PBM
Weirauch et al.(2014)
pTH7270
0.680
0.614
estExt_gwp_gw1.C_70211
M02220_2.00
Physcomitrella patens
HMATNANDNN
NNHNTNATKD
PBM
Weirauch et al.(2014)
pTH8489
0.678
0.702
HAT5
M06914_2.00
Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN
Dap-seq
OMalley et al.(2016)
HAT5_col_a
0.666
0.632
HAT5
M06915_2.00
Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW
Dap-seq
OMalley et al.(2016)
HAT5_colamp_a
0.666
0.632
HAT5
M02683_2.00
Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS
SELEX
Mathelier et al.(2014)
MA0008.2
0.666
0.632
HAT5
M10624_2.00
Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR
Transfac
Matys et al.(2006)
P$ATHB1_01
0.666
0.632
ATHB-21
M06907_2.00
Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB21_col_a
0.660
0.579
ATHB-21
M06908_2.00
Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW
Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a
0.660
0.579
HB-5
M06924_2.00
Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN
Dap-seq
OMalley et al.(2016)
ATHB40_col_a
0.659
0.561
HB-5
M06925_2.00
Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD
Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a
0.659
0.561
ATHB-53
M06934_2.00
Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD
Dap-seq
OMalley et al.(2016)
ATHB53_col_a
0.654
0.544
ATHB-53
M06935_2.00
Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a
0.654
0.544
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0002s17680.1
Homeodomain
29
85
NKNKRRFSDEQIKSLESMFESETRLEPRKKMQLAKELGLQPRQVAIWFQNKRARWKS
Links
Other
Homeodomain
family TFs
Other
Populus trichocarpa
TFs
761 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
HIC2
Homo sapiens
ENSG00000169635
D
0.000
Hic1
Mus musculus
ENSMUSG00000043099
D
0.000
XP_002937184
Xenopus tropicalis
XP_002937184
I
0.000
hic1l
Takifugu rubripes
ENSTRUG00000013139
I
0.000
hic1
Takifugu rubripes
ENSTRUG00000004590
I
0.000
HIC2
Taeniopygia guttata
ENSTGUG00000008699
I
0.000
ENSSTOG00000006360
Ictidomys tridecemlineatus
ENSSTOG00000006360
I
0.000
ENSSSCG00000021196
Sus scrofa
ENSSSCG00000021196
I
0.000
Hic2
Rattus norvegicus
ENSRNOG00000051458
I
0.000
HIC2
Pteropus vampyrus
ENSPVAG00000000111
I
0.000
HIC2
Pan troglodytes
ENSPTRG00000014112
I
0.000
ENSPSIG00000007902
Pelodiscus sinensis
ENSPSIG00000007902
I
0.000
ENSPSIG00000000992
Pelodiscus sinensis
ENSPSIG00000000992
I
0.000
ENSPSIG00000000839
Pelodiscus sinensis
ENSPSIG00000000839
I
0.000
ENSPPYG00000012022
Pongo abelii
ENSPPYG00000012022
I
0.000
ENSXMAG00000020311
Xiphophorus maculatus
ENSXMAG00000020311
I
0.000
Aan_R003503
Calypte anna
Aan_R003503
I
0.000
Aan_R008211
Calypte anna
Aan_R008211
I
0.000
hic2
Xenopus tropicalis
XB-GENE-960044
I
0.000
Tal_R003180
Tyto alba
Tal_R003180
I
0.000
Pvit_18806
Pogona vitticeps
Pvit_18806
I
0.000
Ogr08090
Ophisaurus gracilis
Ogr08090
I
0.000
Myotis_brandtii_HIC2_10021802
Myotis brandtii
Myotis_brandtii_HIC2_10021802
I
0.000
Gfo_R010813
Geospiza fortis
Gfo_R010813
I
0.000
ENSP00000384889
Macaca fascicularis
ENSP00000384889
I
0.000
Cmyd_10017824
Chelonia mydas
Cmyd_10017824
I
0.000
Brh_R005582
Buceros rhinoceros
Brh_R005582
I
0.000
Alligator_sinensis_CCG015471.1
Alligator sinensis
Alligator_sinensis_CCG015471.1
I
0.000
Alligator_sinensis_CCG008952.1
Alligator sinensis
Alligator_sinensis_CCG008952.1
I
0.000
Afo_R013473
Aptenodytes forsteri
Afo_R013473
I
0.000
Afo_R001109
Aptenodytes forsteri
Afo_R001109
I
0.000
ENSPFOG00000020465
Poecilia formosa
ENSPFOG00000020465
I
0.000
HIC2
Procavia capensis
ENSPCAG00000015907
I
0.000
ENSPANG00000024301
Papio anubis
ENSPANG00000024301
I
0.000
hic1
Gasterosteus aculeatus
ENSGACG00000010848
I
0.000
hic1l
Gasterosteus aculeatus
ENSGACG00000004268
I
0.000
HIC2
Felis catus
ENSFCAG00000023903
I
0.000
ENSFALG00000014495
Ficedula albicollis
ENSFALG00000014495
I
0.000
ENSFALG00000006543
Ficedula albicollis
ENSFALG00000006543
I
0.000
HIC2
Equus caballus
ENSECAG00000017997
I
0.000
HIC2
Dasypus novemcinctus
ENSDNOG00000003162
I
0.000
ENSCSAG00000013356
Chlorocebus sabaeus
ENSCSAG00000013356
I
0.000
HIC1
Cavia porcellus
ENSCPOG00000020382
I
0.000
HIC2
Cavia porcellus
ENSCPOG00000001134
I
0.000
HIC2
Canis familiaris
ENSCAFG00000032493
I
0.000
HIC2
Bos taurus
ENSBTAG00000005951
I
0.000
ENSAPLG00000002158
Anas platyrhynchos
ENSAPLG00000002158
I
0.000
ENSGALG00000001403
Gallus gallus
ENSGALG00000001403
I
0.000
ENSGALG00000026718
Gallus gallus
ENSGALG00000026718
I
0.000
hic1
Oryzias latipes
ENSORLG00000004895
I
0.000
ENSONIG00000014335
Oreochromis niloticus
ENSONIG00000014335
I
0.000
HIC2
Otolemur garnettii
ENSOGAG00000030274
I
0.000
HIC2
Oryctolagus cuniculus
ENSOCUG00000010516
I
0.000
Hic2
Mus musculus
ENSMUSG00000050240
I
0.000
ENSMPUG00000003198
Mustela putorius furo
ENSMPUG00000003198
I
0.000
HIC2
Myotis lucifugus
ENSMLUG00000009669
I
0.000
HIC2
Microcebus murinus
ENSMICG00000005154
I
0.000
ENSMGAG00000005397
Meleagris gallopavo
ENSMGAG00000005397
I
0.000
HIC2
Meleagris gallopavo
ENSMGAG00000000949
I
0.000
ENSLOCG00000002169
Lepisosteus oculatus
ENSLOCG00000002169
I
0.000
ENSLACG00000007028
Latimeria chalumnae
ENSLACG00000007028
I
0.000
HIC2
Gorilla gorilla
ENSGGOG00000006041
I
0.000
HIC1
Anolis carolinensis
ENSACAG00000011777
I
0.000