POPTR_0002s17680 (Populus trichocarpa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 POPTR_0002s17680 T222483_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-7
M02043_2.00 		Arabidopsis thaliana
NHWTGATTGN
NCAATCAWDN		 PBM
Weirauch et al.(2014)
pTH8090 		0.718 0.895
ATHB-7
M06911_2.00 		Arabidopsis thaliana
NHYCAATCATTSW
WSAATGATTGRDN		 Dap-seq
OMalley et al.(2016)
ATHB7_col_a 		0.718 0.895
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.698 0.632
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.698 0.632
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.698 0.632
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.698 0.632
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.686 0.632
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.686 0.632
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.680 0.632
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.680 0.632
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.680 0.632
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.680 0.614
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.678 0.702
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.666 0.632
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.666 0.632
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.666 0.632
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.666 0.632
ATHB-21
M06907_2.00 		Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB21_col_a 		0.660 0.579
ATHB-21
M06908_2.00 		Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW		 Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a 		0.660 0.579
HB-5
M06924_2.00 		Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN		 Dap-seq
OMalley et al.(2016)
ATHB40_col_a 		0.659 0.561
HB-5
M06925_2.00 		Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD		 Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a 		0.659 0.561
ATHB-53
M06934_2.00 		Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD		 Dap-seq
OMalley et al.(2016)
ATHB53_col_a 		0.654 0.544
ATHB-53
M06935_2.00 		Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a 		0.654 0.544
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s17680.1 Homeodomain 29 85

Links

Other Homeodomain family TFs
Other Populus trichocarpa TFs

761 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HIC2 Homo sapiens ENSG00000169635 D 0.000
Hic1 Mus musculus ENSMUSG00000043099 D 0.000
XP_002937184 Xenopus tropicalis XP_002937184 I 0.000
hic1l Takifugu rubripes ENSTRUG00000013139 I 0.000
hic1 Takifugu rubripes ENSTRUG00000004590 I 0.000
HIC2 Taeniopygia guttata ENSTGUG00000008699 I 0.000
ENSSTOG00000006360 Ictidomys tridecemlineatus ENSSTOG00000006360 I 0.000
ENSSSCG00000021196 Sus scrofa ENSSSCG00000021196 I 0.000
Hic2 Rattus norvegicus ENSRNOG00000051458 I 0.000
HIC2 Pteropus vampyrus ENSPVAG00000000111 I 0.000
HIC2 Pan troglodytes ENSPTRG00000014112 I 0.000
ENSPSIG00000007902 Pelodiscus sinensis ENSPSIG00000007902 I 0.000
ENSPSIG00000000992 Pelodiscus sinensis ENSPSIG00000000992 I 0.000
ENSPSIG00000000839 Pelodiscus sinensis ENSPSIG00000000839 I 0.000
ENSPPYG00000012022 Pongo abelii ENSPPYG00000012022 I 0.000
ENSXMAG00000020311 Xiphophorus maculatus ENSXMAG00000020311 I 0.000
Aan_R003503 Calypte anna Aan_R003503 I 0.000
Aan_R008211 Calypte anna Aan_R008211 I 0.000
hic2 Xenopus tropicalis XB-GENE-960044 I 0.000
Tal_R003180 Tyto alba Tal_R003180 I 0.000
Pvit_18806 Pogona vitticeps Pvit_18806 I 0.000
Ogr08090 Ophisaurus gracilis Ogr08090 I 0.000
Myotis_brandtii_HIC2_10021802 Myotis brandtii Myotis_brandtii_HIC2_10021802 I 0.000
Gfo_R010813 Geospiza fortis Gfo_R010813 I 0.000
ENSP00000384889 Macaca fascicularis ENSP00000384889 I 0.000
Cmyd_10017824 Chelonia mydas Cmyd_10017824 I 0.000
Brh_R005582 Buceros rhinoceros Brh_R005582 I 0.000
Alligator_sinensis_CCG015471.1 Alligator sinensis Alligator_sinensis_CCG015471.1 I 0.000
Alligator_sinensis_CCG008952.1 Alligator sinensis Alligator_sinensis_CCG008952.1 I 0.000
Afo_R013473 Aptenodytes forsteri Afo_R013473 I 0.000
Afo_R001109 Aptenodytes forsteri Afo_R001109 I 0.000
ENSPFOG00000020465 Poecilia formosa ENSPFOG00000020465 I 0.000
HIC2 Procavia capensis ENSPCAG00000015907 I 0.000
ENSPANG00000024301 Papio anubis ENSPANG00000024301 I 0.000
hic1 Gasterosteus aculeatus ENSGACG00000010848 I 0.000
hic1l Gasterosteus aculeatus ENSGACG00000004268 I 0.000
HIC2 Felis catus ENSFCAG00000023903 I 0.000
ENSFALG00000014495 Ficedula albicollis ENSFALG00000014495 I 0.000
ENSFALG00000006543 Ficedula albicollis ENSFALG00000006543 I 0.000
HIC2 Equus caballus ENSECAG00000017997 I 0.000
HIC2 Dasypus novemcinctus ENSDNOG00000003162 I 0.000
ENSCSAG00000013356 Chlorocebus sabaeus ENSCSAG00000013356 I 0.000
HIC1 Cavia porcellus ENSCPOG00000020382 I 0.000
HIC2 Cavia porcellus ENSCPOG00000001134 I 0.000
HIC2 Canis familiaris ENSCAFG00000032493 I 0.000
HIC2 Bos taurus ENSBTAG00000005951 I 0.000
ENSAPLG00000002158 Anas platyrhynchos ENSAPLG00000002158 I 0.000
ENSGALG00000001403 Gallus gallus ENSGALG00000001403 I 0.000
ENSGALG00000026718 Gallus gallus ENSGALG00000026718 I 0.000
hic1 Oryzias latipes ENSORLG00000004895 I 0.000
ENSONIG00000014335 Oreochromis niloticus ENSONIG00000014335 I 0.000
HIC2 Otolemur garnettii ENSOGAG00000030274 I 0.000
HIC2 Oryctolagus cuniculus ENSOCUG00000010516 I 0.000
Hic2 Mus musculus ENSMUSG00000050240 I 0.000
ENSMPUG00000003198 Mustela putorius furo ENSMPUG00000003198 I 0.000
HIC2 Myotis lucifugus ENSMLUG00000009669 I 0.000
HIC2 Microcebus murinus ENSMICG00000005154 I 0.000
ENSMGAG00000005397 Meleagris gallopavo ENSMGAG00000005397 I 0.000
HIC2 Meleagris gallopavo ENSMGAG00000000949 I 0.000
ENSLOCG00000002169 Lepisosteus oculatus ENSLOCG00000002169 I 0.000
ENSLACG00000007028 Latimeria chalumnae ENSLACG00000007028 I 0.000
HIC2 Gorilla gorilla ENSGGOG00000006041 I 0.000
HIC1 Anolis carolinensis ENSACAG00000011777 I 0.000