POPTR_0002s20990 (Populus trichocarpa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 POPTR_0002s20990 T222484_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s20990.1 Homeodomain 57 113

Links

Other Homeodomain family TFs
Other Populus trichocarpa TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0155s0080 Salix purpurea SapurV1A.0155s0080 N 0.867
POPTR_0014s12730 Populus trichocarpa POPTR_0014s12730 N 0.789
TCM_004566 Theobroma cacao TCM_004566 N 0.738
orange1.1g001425m.g Citrus sinensis orange1.1g001425m.g N 0.732
Ciclev10018617m.g Citrus clementina Ciclev10018617m.g N 0.732
LD Vitis vinifera VIT_07s0104g01580 N 0.727
cassava29582.valid.m1 Manihot esculenta cassava29582.valid.m1 N 0.721
cassava29583.valid.m1 Manihot esculenta cassava29583.valid.m1 N 0.721
AMTR_s00057p00206030 Amborella trichopoda AMTR_s00057p00206030 N 0.720
GSMUA_Achr1G11230_001 Musa acuminata GSMUA_Achr1G11230_001 N 0.702
PK02496.1 Cannabis sativa PK02496.1 N 0.698
Solyc09g074690.2 Solanum lycopersicum Solyc09g074690.2 N 0.692
OGLUM01G47350 Oryza glumaepatula OGLUM01G47350 N 0.689
OLONG_017231 Oryza longistaminata OLONG_017231 N 0.689
OBART01G43050 Oryza barthii OBART01G43050 N 0.689
BGIOSGA005119 Oryza indica BGIOSGA005119 N 0.689
LPERR01G37480 Leersia perrieri LPERR01G37480 N 0.689
ORUFI01G46480 Oryza rufipogon ORUFI01G46480 N 0.689
ONIVA01G48990 Oryza nivara ONIVA01G48990 N 0.689
ORGLA01G0367900 Oryza glaberrima ORGLA01G0367900 N 0.689
OS01G0934300 Oryza sativa OS01G0934300 N 0.689
OPUNC01G42000 Oryza punctata OPUNC01G42000 N 0.689
Aquca_017_00223 Aquilegia coerulea Aquca_017_00223 N 0.687
BRADI2G59937 Brachypodium distachyon BRADI2G59937 N 0.683
Traes_3DL_D4FBDA9DC Triticum aestivum Traes_3DL_D4FBDA9DC N 0.681
Traes_3B_3142C10C9 Triticum aestivum Traes_3B_3142C10C9 N 0.681
TRIUR3_34541 Triticum urartu TRIUR3_34541 N 0.681
PDK_20s1602441g001 Phoenix dactylifera PDK_20s1602441g001 N 0.669
OB01G52060 Oryza brachyantha OB01G52060 N 0.658