POPTR_0003s04860 (Populus trichocarpa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 POPTR_0003s04860 T222487_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATHB-15
M00864_2.00
Arabidopsis thaliana
AATAATTACT

AGTAATTATT
PBM
Franco-Zorrilla et al.(2014)
ICU4
0.867 1.000
ATHB-15
M06899_2.00
Arabidopsis thaliana
DWWDRTAATGATKAH

DTMATCATTAYHWWH
Dap-seq
OMalley et al.(2016)
ATHB15_col_a
0.867 1.000
ATHB-9
M06898_2.00
Arabidopsis thaliana
DWWDRTAATGATKAH

DTMATCATTAYHWWH
Dap-seq
OMalley et al.(2016)
PHV_col_a
0.861 0.911
ATHB-9
M02682_2.00
Arabidopsis thaliana
HNHHGTAATGATTRCDYBS

SVRHGYAATCATTACDDND
SELEX
Mathelier et al.(2014)
MA0573.1
0.861 0.911
ATHB-9
M10623_2.00
Arabidopsis thaliana
HNHHGTAATGATTRCDYBS

SVRHGYAATCATTACDDND
Transfac
Matys et al.(2006)
P$ATHB9_01
0.861 0.911
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s04860.1 Homeodomain 16 75

Links

Other Homeodomain family TFs
Other Populus trichocarpa TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CFIO01_06545 Colletotrichum fioriniae CFIO01_06545 I 0.000
CGGC5_4998 Colletotrichum gloeosporioides CGGC5_4998 I 0.000
CH063_11331 Colletotrichum higginsianum CH063_11331 I 0.000
estExt_Genewise1.C_20387 Neurospora discreta estExt_Genewise1.C_20387 I 0.000
FFUJ_06263 Fusarium fujikuroi FFUJ_06263 I 0.000
fgenesh1_pm.sca_2_chr3_3_0000229 Nectria haematococca fgenesh1_pm.sca_2_chr3_3_0000229 I 0.000
FGRRES_08791 Fusarium graminearum FGRRES_08791 I 0.000
FOXG_03048 Fusarium oxysporum FOXG_03048 I 0.000
FPSE_11956 Fusarium pseudograminearum FPSE_11956 I 0.000
FVEG_01911 Fusarium verticillioides FVEG_01911 I 0.000
GLRG_02566 Colletotrichum graminicola GLRG_02566 I 0.000
NechaG91829 Fusarium solani NechaG91829 I 0.000
NEUTE1DRAFT_149310 Neurospora tetrasperma NEUTE1DRAFT_149310 I 0.000
SAPIO_CDS9919 Scedosporium apiospermum SAPIO_CDS9919 I 0.000
SMAC_05275 Sordaria macrospora SMAC_05275 I 0.000
VHEMI04212 Torrubiella hemipterigena VHEMI04212 I 0.000