POPTR_0004s04840 (Populus trichocarpa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 POPTR_0004s04840 T222495_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s04840.1 Homeodomain 1 52

Links

Other Homeodomain family TFs
Other Populus trichocarpa TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ONIVA05G12010 Oryza nivara ONIVA05G12010 N 0.857
BGIOSGA019617 Oryza indica BGIOSGA019617 N 0.857
OLONG_014924 Oryza longistaminata OLONG_014924 N 0.851
OBART01G26120 Oryza barthii OBART01G26120 N 0.851
OB01G35260 Oryza brachyantha OB01G35260 N 0.851
GSMUA_Achr9G06610_001 Musa acuminata GSMUA_Achr9G06610_001 N 0.851
GSMUA_Achr8G27210_001 Musa acuminata GSMUA_Achr8G27210_001 N 0.851
OBART05G11630 Oryza barthii OBART05G11630 N 0.828
TCM_008214 Theobroma cacao TCM_008214 I 0.761
ORUFI05G12600 Oryza rufipogon ORUFI05G12600 N 0.725
Pm012761 Prunus mume Pm012761 N 0.662
Gorai.004G014700 Gossypium raimondii Gorai.004G014700 I 0.662
scaffold_603934.1 Arabidopsis lyrata scaffold_603934.1 N 0.660
GLYMA08G38930 Glycine max GLYMA08G38930 N 0.658
Bo9g006410 Brassica oleracea Bo9g006410 N 0.656
LjSGA_012738.1 Lotus japonicus LjSGA_012738.1 N 0.652
cassava31027.valid.m1 Manihot esculenta cassava31027.valid.m1 N 0.652
gene14635-v1.0-hybrid Fragaria vesca gene14635-v1.0-hybrid N 0.640
PGSC0003DMG400004714 Solanum tuberosum PGSC0003DMG400004714 I 0.637
Gorai.013G254100 Gossypium raimondii Gorai.013G254100 I 0.636
SapurV1A.0042s0570 Salix purpurea SapurV1A.0042s0570 I 0.636