POPTR_0011s11510 (Populus trichocarpa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 POPTR_0011s11510 T222556_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD

HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.722 0.614
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD

HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.722 0.614
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.722 0.596
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.722 0.596
ATHB-12
M00865_2.00
Arabidopsis thaliana
NNNNNNNN

NNNNNNNN
PBM
Franco-Zorrilla et al.(2014)
ATHB12
0.631 0.561
ATHB-12
M02045_2.00
Arabidopsis thaliana
BHWWWWWWDV

BHWWWWWWDV
PBM
Weirauch et al.(2014)
pTH7207
0.631 0.561
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN

NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.626 0.526
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD

HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.626 0.526
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA

TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.626 0.526
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN

NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
0.623 0.474
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0011s11510.1 Homeodomain 17 73

Links

Other Homeodomain family TFs
Other Populus trichocarpa TFs

193 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AUEXF2481DRAFT_53931 Aureobasidium subglaciale AUEXF2481DRAFT_53931 N 0.000
BDDG_07076 Blastomyces dermatitidis BDDG_07076 N 0.000
CADANGAG00010655 Aspergillus niger CADANGAG00010655 N 0.000
EURHEDRAFT_519160 Aspergillus ruber EURHEDRAFT_519160 N 0.000
fgenesh1_pm.00626_#_98 Aspergillus carbonarius fgenesh1_pm.00626_#_98 N 0.000
M437DRAFT_20648 Aureobasidium melanogenum M437DRAFT_20648 N 0.000
M438DRAFT_346183 Aureobasidium pullulans M438DRAFT_346183 N 0.000
NCU03273 Neurospora crassa NCU03273 N 0.000
PAAG_06129 Paracoccidioides sp lutzii PAAG_06129 N 0.000
PABG_06528 Paracoccidioides brasiliensis PABG_06528 N 0.000
Pc21g09140 Penicillium chrysogenum Pc21g09140 N 0.000
PCH_Pc21g09140 Penicillium rubens PCH_Pc21g09140 N 0.000
PDE_00588 Penicillium oxalicum PDE_00588 N 0.000
PEX1_067720 Penicillium expansum PEX1_067720 N 0.000
PMAA_089950 Talaromyces marneffei PMAA_089950 N 0.000
PMAA_089950 Penicillium marneffei PMAA_089950 N 0.000