POPTR_0011s11510 (Populus trichocarpa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 POPTR_0011s11510 T222556_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD

HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.722 0.614
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD

HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.722 0.614
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.722 0.596
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.722 0.596
ATHB-12
M00865_2.00
Arabidopsis thaliana
NNNNNNNN

NNNNNNNN
PBM
Franco-Zorrilla et al.(2014)
ATHB12
0.631 0.561
ATHB-12
M02045_2.00
Arabidopsis thaliana
BHWWWWWWDV

BHWWWWWWDV
PBM
Weirauch et al.(2014)
pTH7207
0.631 0.561
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN

NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.626 0.526
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD

HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.626 0.526
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA

TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.626 0.526
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN

NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
0.623 0.474
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0011s11510.1 Homeodomain 17 73

Links

Other Homeodomain family TFs
Other Populus trichocarpa TFs

193 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A1O7_01274 Cladophialophora yegresii A1O7_01274 N 0.000
ACLA_007900 Aspergillus clavatus CADACLAG00000690 N 0.000
ACRE_078350 Acremonium chrysogenum ACRE_078350 N 0.000
AFUA_5G01550 Aspergillus fumigatus CADAFUAG00002870 N 0.000
AUEXF2481DRAFT_70659 Aureobasidium subglaciale AUEXF2481DRAFT_70659 N 0.000
BBA_03307 Beauveria bassiana BBA_03307 N 0.000
CADANGAG00005441 Aspergillus niger CADANGAG00005441 N 0.000
CFIO01_02089 Colletotrichum fioriniae CFIO01_02089 N 0.000
CFIO01_08628 Colletotrichum fioriniae CFIO01_08628 N 0.000
CGGC5_8904 Colletotrichum gloeosporioides CGGC5_8904 N 0.000
CMQ_1388 Grosmannia clavigera CMQ_1388 N 0.000
Cob_02086 Colletotrichum orbiculare Cob_02086 N 0.000
CSUB01_05917 Colletotrichum sublineola CSUB01_05917 N 0.000
estExt_Genewise1.C_12883 Cryphonectria parasitica estExt_Genewise1.C_12883 N 0.000
estExt_Genewise1.C_sca_17_chr8_1_00336 Nectria haematococca estExt_Genewise1.C_sca_17_chr8_1_00336 N 0.000
e_gw1.00771.84.1 Aspergillus carbonarius e_gw1.00771.84.1 N 0.000
e_gw1.20.1612.1 Nectria haematococca e_gw1.20.1612.1 N 0.000
F503_02152 Ophiostoma piceae uamh F503_02152 N 0.000
FFUJ_00276 Fusarium fujikuroi FFUJ_00276 N 0.000
FFUJ_08949 Fusarium fujikuroi FFUJ_08949 N 0.000
FFUJ_10046 Fusarium fujikuroi FFUJ_10046 N 0.000
fgenesh1_pg.sca_11_chr8_3_0000285 Nectria haematococca fgenesh1_pg.sca_11_chr8_3_0000285 N 0.000
fgenesh1_pg.sca_5_chr5_3_0000637 Nectria haematococca fgenesh1_pg.sca_5_chr5_3_0000637 N 0.000
FGRRES_00217 Fusarium graminearum FGRRES_00217 N 0.000
FGRRES_09014 Fusarium graminearum FGRRES_09014 N 0.000
FOXG_01257 Fusarium oxysporum FOXG_01257 N 0.000
FOXG_09079 Fusarium oxysporum FOXG_09079 N 0.000
FOXG_13654 Fusarium oxysporum FOXG_13654 N 0.000
FPSE_06963 Fusarium pseudograminearum FPSE_06963 N 0.000
FVEG_06682 Fusarium verticillioides FVEG_06682 N 0.000
FVEG_11090 Fusarium verticillioides FVEG_11090 N 0.000
G647_01336 Cladophialophora carrionii G647_01336 N 0.000
GGTG_12271 Gaeumannomyces graminis GGTG_12271 N 0.000
GLRG_04837 Colletotrichum graminicola GLRG_04837 N 0.000
HMPREF1624_05416 Sporothrix schenckii HMPREF1624_05416 N 0.000
M437DRAFT_51250 Aureobasidium melanogenum M437DRAFT_51250 N 0.000
MAC_07316 Metarhizium acridum MAC_07316 N 0.000
MAJ_09423 Metarhizium majus MAJ_09423 N 0.000
MAM_07146 Metarhizium album MAM_07146 N 0.000
MANI_005235 Metarhizium anisopliae MANI_005235 N 0.000
MAPG_09611 Magnaporthe poae MAPG_09611 N 0.000
MBR_09867 Metarhizium brunneum MBR_09867 N 0.000
MGU_07052 Metarhizium guizhouense MGU_07052 N 0.000
NechaG44183 Fusarium solani NechaG44183 N 0.000
NechaG62595 Fusarium solani NechaG62595 N 0.000
NechaG80838 Fusarium solani NechaG80838 N 0.000
NechaG84217 Fusarium solani NechaG84217 N 0.000
OIDMADRAFT_169765 Oidiodendron maius OIDMADRAFT_169765 N 0.000
Pc16g10860 Penicillium chrysogenum Pc16g10860 N 0.000
PCH_Pc16g10860 Penicillium rubens PCH_Pc16g10860 N 0.000
PEX1_030190 Penicillium expansum PEX1_030190 N 0.000
PFICI_01074 Pestalotiopsis fici PFICI_01074 N 0.000
PFICI_07869 Pestalotiopsis fici PFICI_07869 N 0.000
PITC_081790 Penicillium italicum PITC_081790 N 0.000
PMAA_080390 Penicillium marneffei PMAA_080390 N 0.000
PMAA_080390 Talaromyces marneffei PMAA_080390 N 0.000
PODANS_2_6520 Podospora anserina PODANS_2_6520 N 0.000
PV06_10606 Exophiala oligosperma PV06_10606 N 0.000
PV07_02862 Cladophialophora immunda PV07_02862 N 0.000
PV08_02174 Exophiala spinifera PV08_02174 N 0.000
PVAR5_0122 Byssochlamys spectabilis PVAR5_0122 N 0.000
S40285_02230 Stachybotrys chlorohalonata S40285_02230 N 0.000
S40288_03755 Stachybotrys chartarum S40288_03755 N 0.000
SAPIO_CDS8323 Scedosporium apiospermum SAPIO_CDS8323 N 0.000
SNOG_10852 Stagonospora nodorum SNOG_10852 N 0.000
SPBR_04675 Sporothrix brasiliensis SPBR_04675 N 0.000
THITE_2107846 Thielavia terrestris THITE_2107846 N 0.000
TRIATDRAFT_322087 Trichoderma atroviride TRIATDRAFT_322087 N 0.000
TSTA_114940 Talaromyces stipitatus TSTA_114940 N 0.000
U727_00431181161 Penicillium solitum U727_00431181161 N 0.000
UCRPA7_5783 Togninia minima UCRPA7_5783 N 0.000
VDAG_05079 Verticillium dahliae VDAG_05079 N 0.000
VDBG_06541 Verticillium alfalfae VDBG_06541 N 0.000
VDBG_06541 Verticillium albo atrum VDBG_06541 N 0.000
X797_009746 Metarhizium robertsii X797_009746 N 0.000
Z517_00469 Fonsecaea pedrosoi Z517_00469 N 0.000
Z518_11281 Rhinocladiella mackenziei Z518_11281 N 0.000