TF Information

PPA08723 *(Pristionchus pacificus)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	PPA08723	T222616_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ceh-22 M00376_2.00	Caenorhabditis elegans	WBRAGTRBNN	NNVYACTYVW	PBM Berger et al.(2006) Ceh-22	0.623	0.456
Nkx2-6 M00496_2.00	Mus musculus	HYAAGTRBNN	NNVYACTTRD	PBM Berger et al.(2008) Nkx2-6_3437	0.609	0.439
scro M03854_2.00	Drosophila melanogaster	NNBRMGTGB	VCACKYVNN	SELEX Nitta et al.(2015) scro_1	0.601	0.439
vnd M06551_2.00	Drosophila melanogaster	WYTCAAGTR	YACTTGARW	B1H Mathelier et al.(2014) MA0253.1	0.601	0.439
vnd M06377_2.00	Drosophila melanogaster	WYTCAAGTR	YACTTGARW	B1H Zhu et al.(2011) Vnd_Cell_FBgn0003986	0.601	0.439
vnd M06378_2.00	Drosophila melanogaster	KYTSAAGWGY	RCWCTTSARM	B1H Zhu et al.(2011) vnd_FlyReg_FBgn0003986	0.601	0.439
vnd M06379_2.00	Drosophila melanogaster	BTBAAGTR	YACTTVAV	B1H Zhu et al.(2011) Vnd_SOLEXA_FBgn0003986	0.601	0.439
vnd M09683_2.00	Drosophila melanogaster	TCAAGTGB	VCACTTGA	Misc Kulakovskiy et al.(2009) vnd	0.601	0.439
Nkx2-1 M00385_2.00	Mus musculus	NNRAGDRN	NYHCTYNN	PBM Berger et al.(2008) Titf1_1722	0.601	0.421
Nkx2-2 M00438_2.00	Mus musculus	NNNRAGDRN	NYHCTYNNN	PBM Berger et al.(2008) Nkx2-2_2823	0.601	0.421
Nkx2-4 M00514_2.00	Mus musculus	NNRAGDRBNN	NNVYHCTYNN	PBM Berger et al.(2008) Nkx2-4_3074	0.601	0.421
ceh-24 M02181_2.00	Caenorhabditis elegans	NNRAKWRNN	NNYWMTYNN	PBM Weirauch et al.(2014) pTH6327	0.601	0.421
NKX2-1 M09146_2.00	Homo sapiens	BTKGAGWGBN	NVCWCTCMAV	Misc Kulakovskiy et al.(2013) NKX21_HUMAN.H11MO.0.A	0.601	0.421
Nkx2-1 M09171_2.00	Mus musculus	NBTKGAGWGB	VCWCTCMAVN	Misc Kulakovskiy et al.(2013) NKX21_MOUSE.H11MO.0.A	0.601	0.421
Nkx2-2 M09190_2.00	Mus musculus	NTBRAGWGBBN	NVVCWCTYVAN	Misc Kulakovskiy et al.(2013) NKX22_MOUSE.H11MO.0.A	0.601	0.421
Nkx2-1 M09563_2.00	Mus musculus	BTBRAGWGBH	DVCWCTYVAV	Misc Heinz et al.(2010) LungAC-Nkx2.1_GSE43252	0.601	0.421
NKX2-2 M10681_2.00	Homo sapiens	WTAAGTRBTT	AAVYACTTAW	Transfac Matys et al.(2006) V$NKX22_01	0.601	0.421
NKX2-2 M10682_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NKX2B_Q3_01	0.601	0.421
NKX2-2 M10683_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NKX2B_Q3	0.601	0.421
NKX2-1 M10694_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TITF1_Q3	0.601	0.421
NKX2-1 M10695_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TTF1_Q5_01	0.601	0.421
NKX2-1 M10696_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TTF1_Q5	0.601	0.421
NKX2-1 M10697_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TTF1_Q6	0.601	0.421
ceh-28 M08210_2.00	Caenorhabditis elegans	AATCGATW	WATCGATT	ChIP-seq Contrino et al.(2012) Mw138	0.600	0.421
CDX1 M10761_2.00	Gallus gallus	BDBWAAK	MTTWVHV	Transfac Matys et al.(2006) V$CDXA_01	0.599	0.386
CDX1 M10762_2.00	Gallus gallus	WWWWMYR	YRKWAWW	Transfac Matys et al.(2006) V$CDXA_02	0.599	0.386
For this family, TFs with SR scores > 0.599* will likely have a similar motif*