Sb03g036820 (Sorghum bicolor)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Sb03g036820 T222972_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.602 0.561
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.602 0.561
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.602 0.561
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.602 0.561
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb03g036820.1 Homeodomain 110 166

Links

Other Homeodomain family TFs
Other Sorghum bicolor TFs

181 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si000488m.g Setaria italica Si000488m.g I 0.839
GRMZM2G386276 Zea mays GRMZM2G386276 N 0.749
Pavir.Ea03124 Panicum virgatum Pavir.Ea03124 N 0.737
Carubv10002574m.g Capsella rubella Carubv10002574m.g I 0.639
Cagra.4849s0002 Capsella grandiflora Cagra.4849s0002 I 0.639
evm.TU.supercontig_178.19 Carica papaya evm.TU.supercontig_178.19 I 0.631
OPUNC01G32670 Oryza punctata OPUNC01G32670 N 0.628
OMERI01G30450 Oryza meridionalis OMERI01G30450 N 0.625
Bo6g069620 Brassica oleracea Bo6g069620 I 0.625
OGLUM01G37810 Oryza glumaepatula OGLUM01G37810 N 0.625
OBART01G33600 Oryza barthii OBART01G33600 N 0.625
BGIOSGA004593 Oryza indica BGIOSGA004593 N 0.625
ONIVA01G38360 Oryza nivara ONIVA01G38360 N 0.625
ORGLA01G0275300 Oryza glaberrima ORGLA01G0275300 N 0.625
Bra003213 Brassica rapa Bra003213 I 0.625
ORUFI01G36780 Oryza rufipogon ORUFI01G36780 N 0.625
Thhalv10021974m.g Eutrema salsugineum Thhalv10021974m.g I 0.624
Carubv10015764m.g Capsella rubella Carubv10015764m.g I 0.624
HDG8 Arabidopsis thaliana AT3G03260 I 0.624
Cagra.2098s0060 Capsella grandiflora Cagra.2098s0060 I 0.624
AMTR_s00004p00265170 Amborella trichopoda AMTR_s00004p00265170 I 0.620
Bra020066 Brassica rapa Bra020066 I 0.619
Bra032003 Brassica rapa Bra032003 I 0.619
Bo5g150100 Brassica oleracea Bo5g150100 I 0.619
Bo2g018400 Brassica oleracea Bo2g018400 I 0.619
SELMODRAFT_450555 Selaginella moellendorffii SELMODRAFT_450555 I 0.617
GLYMA08G21890 Glycine max GLYMA08G21890 I 0.617
GLYMA07G02220 Glycine max GLYMA07G02220 I 0.617
SELMODRAFT_450557 Selaginella moellendorffii SELMODRAFT_450557 I 0.617
Bo1g154790 Brassica oleracea Bo1g154790 I 0.617
F775_19574 Aegilops tauschii F775_19574 I 0.614
TRIUR3_24584 Triticum urartu TRIUR3_24584 I 0.614
Traes_7DL_57A842933 Triticum aestivum Traes_7DL_57A842933 I 0.614
OB01G42420 Oryza brachyantha OB01G42420 N 0.614
cassava38731.m1 Manihot esculenta cassava38731.m1 I 0.613
TCM_017892 Theobroma cacao TCM_017892 I 0.613
GRMZM2G118063 Zea mays GRMZM2G118063 I 0.606
Traes_2AL_48B239DD6 Triticum aestivum Traes_2AL_48B239DD6 I 0.604
Traes_2BL_1F5DBD5D5 Triticum aestivum Traes_2BL_1F5DBD5D5 I 0.604
SapurV1A.0722s0230 Salix purpurea SapurV1A.0722s0230 I 0.604
TCM_030175 Theobroma cacao TCM_030175 I 0.604
SapurV1A.1440s0010 Salix purpurea SapurV1A.1440s0010 I 0.604
SapurV1A.0402s0050 Salix purpurea SapurV1A.0402s0050 I 0.604
Traes_2DL_95721ADDA Triticum aestivum Traes_2DL_95721ADDA I 0.604
VIT_10s0116g00680 Vitis vinifera VIT_10s0116g00680 I 0.604
HDG2 Vitis vinifera VIT_12s0059g02310 I 0.604
Pavir.J09537 Panicum virgatum Pavir.J09537 I 0.604
Pavir.J18262 Panicum virgatum Pavir.J18262 I 0.604
Pavir.J39995 Panicum virgatum Pavir.J39995 I 0.604
Thhalv10006934m.g Eutrema salsugineum Thhalv10006934m.g I 0.604
Si013285m.g Setaria italica Si013285m.g I 0.604
Sb07g002780 Sorghum bicolor Sb07g002780 I 0.604
Sb07g005180 Sorghum bicolor Sb07g005180 I 0.604
Sb06g029270 Sorghum bicolor Sb06g029270 I 0.604
PRUPE_ppa019198mg Prunus persica PRUPE_ppa019198mg I 0.604
HDG3 Arabidopsis lyrata Al_scaffold_0125_1 I 0.604
LjSGA_029418.1 Lotus japonicus LjSGA_029418.1 I 0.604
LjSGA_004176.2 Lotus japonicus LjSGA_004176.2 I 0.604
Si013279m.g Setaria italica Si013279m.g I 0.604
Si009409m.g Setaria italica Si009409m.g I 0.604
Thhalv10028459m.g Eutrema salsugineum Thhalv10028459m.g I 0.604
PK16243.1 Cannabis sativa PK16243.1 I 0.604
Ca_07131 Cicer arietinum Ca_07131 I 0.604
Pavir.Gb00438 Panicum virgatum Pavir.Gb00438 I 0.604
Lus10027175.g Linum usitatissimum Lus10027175.g I 0.604
POPTR_0011s00520 Populus trichocarpa POPTR_0011s00520 I 0.604
Lus10039667.g Linum usitatissimum Lus10039667.g I 0.604
MDP0000318514 Malus domestica MDP0000318514 I 0.604
Cagra.1671s0144 Capsella grandiflora Cagra.1671s0144 I 0.604
Lus10020059.g Linum usitatissimum Lus10020059.g I 0.604
Carubv10008621m.g Capsella rubella Carubv10008621m.g I 0.604
evm.TU.supercontig_8.223 Carica papaya evm.TU.supercontig_8.223 I 0.604
Eucgr.A01715 Eucalyptus grandis Eucgr.A01715 I 0.604
Ciclev10014373m.g Citrus clementina Ciclev10014373m.g I 0.604
Lus10006765.g Linum usitatissimum Lus10006765.g I 0.604
Bostr.25219s0446 Boechera stricta Bostr.25219s0446 I 0.604
Aquca_047_00083 Aquilegia coerulea Aquca_047_00083 I 0.604
29600.m000538 Ricinus communis 29600.m000538 I 0.604
29842.m003633 Ricinus communis 29842.m003633 I 0.604
Pavir.Fb00210 Panicum virgatum Pavir.Fb00210 I 0.604
Pm015192 Prunus mume Pm015192 I 0.604
Cla010659 Citrullus lanatus Cla010659 I 0.604
cassava12566.valid.m1 Manihot esculenta cassava12566.valid.m1 I 0.604
orange1.1g004294m.g Citrus sinensis orange1.1g004294m.g I 0.604
mgf006361m Mimulus guttatus mgf006361m I 0.604
Cucsa.072780 Cucumis sativus Cucsa.072780 I 0.604
MDP0000389745 Malus domestica MDP0000389745 I 0.604
cassava26453.m1 Manihot esculenta cassava26453.m1 I 0.604
evm.TU.supercontig_198.17 Carica papaya evm.TU.supercontig_198.17 I 0.604
POPTR_0014s15010 Populus trichocarpa POPTR_0014s15010 I 0.604
GRMZM2G122897 Zea mays GRMZM2G122897 I 0.604
GRMZM2G130442 Zea mays GRMZM2G130442 I 0.604
GRMZM2G004957 Zea mays GRMZM2G004957 I 0.604
GRMZM2G001289 Zea mays GRMZM2G001289 I 0.604
GLYMA13G38430 Glycine max GLYMA13G38430 I 0.604
POPTR_0004s01980 Populus trichocarpa POPTR_0004s01980 I 0.604
GSMUA_Achr11G25820_001 Musa acuminata GSMUA_Achr11G25820_001 I 0.604
MTR_2g088470 Medicago truncatula MTR_2g088470 I 0.604
OB04G32930 Oryza brachyantha OB04G32930 I 0.604
MLOC_65829 Hordeum vulgare MLOC_65829 I 0.604
LPERR08G02370 Leersia perrieri LPERR08G02370 I 0.604
LPERR04G21690 Leersia perrieri LPERR04G21690 I 0.604
GLYMA12G32050 Glycine max GLYMA12G32050 I 0.604
GLYMA12G10710 Glycine max GLYMA12G10710 I 0.604
Bo3g048340 Brassica oleracea Bo3g048340 I 0.604
Bo5g005350 Brassica oleracea Bo5g005350 I 0.604
BGIOSGA027698 Oryza indica BGIOSGA027698 I 0.604
BGIOSGA014307 Oryza indica BGIOSGA014307 I 0.604
BGIOSGA014304 Oryza indica BGIOSGA014304 I 0.604
Bo8g115250 Brassica oleracea Bo8g115250 I 0.604
Bra000807 Brassica rapa Bra000807 I 0.604
F775_52393 Aegilops tauschii F775_52393 I 0.604
GLYMA06G46000 Glycine max GLYMA06G46000 I 0.604
BRADI3G15327 Brachypodium distachyon BRADI3G15327 I 0.604
Bra032478 Brassica rapa Bra032478 I 0.604
Bra015401 Brassica rapa Bra015401 I 0.604
OB08G12470 Oryza brachyantha OB08G12470 I 0.604
GSMUA_Achr10G04900_001 Musa acuminata GSMUA_Achr10G04900_001 I 0.604
OLONG_026649 Oryza longistaminata OLONG_026649 I 0.604
OLONG_020222 Oryza longistaminata OLONG_020222 I 0.604
OB08G15090 Oryza brachyantha OB08G15090 I 0.604
ORGLA08G0042800 Oryza glaberrima ORGLA08G0042800 I 0.604
OMERI08G02310 Oryza meridionalis OMERI08G02310 I 0.604
ONIVA04G25060 Oryza nivara ONIVA04G25060 I 0.604
OPUNC08G02090 Oryza punctata OPUNC08G02090 I 0.604
ORGLA04G0231200 Oryza glaberrima ORGLA04G0231200 I 0.604
OPUNC04G23630 Oryza punctata OPUNC04G23630 I 0.604
ONIVA08G02450 Oryza nivara ONIVA08G02450 I 0.604
OLONG_001685 Oryza longistaminata OLONG_001685 I 0.604
ORGLA08G0016400 Oryza glaberrima ORGLA08G0016400 I 0.604
ORUFI04G27800 Oryza rufipogon ORUFI04G27800 I 0.604
POPTR_0002s23080 Populus trichocarpa POPTR_0002s23080 I 0.604
OBART08G02270 Oryza barthii OBART08G02270 I 0.604
OBART04G26630 Oryza barthii OBART04G26630 I 0.604
OS08G0136100 Oryza sativa OS08G0136100 I 0.604
OS08G0187500 Oryza sativa OS08G0187500 I 0.604
OGLUM04G26010 Oryza glumaepatula OGLUM04G26010 I 0.604
ORUFI08G02510 Oryza rufipogon ORUFI08G02510 I 0.604
OGLUM08G02240 Oryza glumaepatula OGLUM08G02240 I 0.604
Solyc10g005330.2 Solanum lycopersicum Solyc10g005330.2 I 0.603
Lus10018360.g Linum usitatissimum Lus10018360.g I 0.603
PGSC0003DMG400024068 Solanum tuberosum PGSC0003DMG400024068 I 0.603
PGSC0003DMG400011256 Solanum tuberosum PGSC0003DMG400011256 I 0.603
Gorai.013G100200 Gossypium raimondii Gorai.013G100200 I 0.603
Lus10007650.g Linum usitatissimum Lus10007650.g I 0.603
Gorai.010G177800 Gossypium raimondii Gorai.010G177800 I 0.603
Gorai.008G172800 Gossypium raimondii Gorai.008G172800 I 0.603
Gorai.005G150100 Gossypium raimondii Gorai.005G150100 I 0.603
Eucgr.K00800 Eucalyptus grandis Eucgr.K00800 I 0.603
TCM_011330 Theobroma cacao TCM_011330 I 0.603
Bostr.30275s0233 Boechera stricta Bostr.30275s0233 I 0.603
cassava6464.valid.m1 Manihot esculenta cassava6464.valid.m1 I 0.603
mgf015621m Mimulus guttatus mgf015621m I 0.603
Bostr.10689s0126 Boechera stricta Bostr.10689s0126 I 0.602
Bo9g077670 Brassica oleracea Bo9g077670 I 0.602
Bo7g107550 Brassica oleracea Bo7g107550 I 0.602
Bo3g163910 Brassica oleracea Bo3g163910 I 0.602
Bo1g025510 Brassica oleracea Bo1g025510 I 0.602
ATML1 Arabidopsis thaliana AT4G21750 D 0.602
Thhalv10024488m.g Eutrema salsugineum Thhalv10024488m.g I 0.602
Cla007796 Citrullus lanatus Cla007796 I 0.602
MLOC_52316 Hordeum vulgare MLOC_52316 I 0.602
Cucsa.148430 Cucumis sativus Cucsa.148430 I 0.602
Bra013556 Brassica rapa Bra013556 I 0.602
Cagra.5070s0005 Capsella grandiflora Cagra.5070s0005 I 0.602
Cagra.3519s0026 Capsella grandiflora Cagra.3519s0026 I 0.602
Carubv10000300m.g Capsella rubella Carubv10000300m.g I 0.602
Carubv10006895m.g Capsella rubella Carubv10006895m.g I 0.602
PDF2 Arabidopsis thaliana AT4G04890 D 0.602
HDG2 Arabidopsis thaliana AT1G05230 I 0.602
BRADI3G14500 Brachypodium distachyon BRADI3G14500 I 0.602
Bostr.7867s0363 Boechera stricta Bostr.7867s0363 I 0.602
Bra020872 Brassica rapa Bra020872 I 0.602
Bra029527 Brassica rapa Bra029527 I 0.602
Bostr.2983s0029 Boechera stricta Bostr.2983s0029 I 0.602
Bo9g161400 Brassica oleracea Bo9g161400 I 0.601
mgf002757m Mimulus guttatus mgf002757m I 0.601
Bostr.2618s0068 Boechera stricta Bostr.2618s0068 I 0.601
evm.TU.supercontig_178.20 Carica papaya evm.TU.supercontig_178.20 I 0.600
TCM_025205 Theobroma cacao TCM_025205 I 0.600
HDG4 Arabidopsis thaliana AT4G17710 I 0.599