Sb09g028562 (Sorghum bicolor)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Sb09g028562 T223010_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
WOX11
M06916_2.00
Arabidopsis thaliana
ADTTAATTAVD

HBTAATTAAHT
Dap-seq
OMalley et al.(2016)
WOX11_col_a
0.742 0.667
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb09g028562.1 Homeodomain 35 96

Links

Other Homeodomain family TFs
Other Sorghum bicolor TFs

218 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Si025013m.g Setaria italica Si025013m.g I 0.867
GRMZM2G409881 Zea mays GRMZM2G409881 I 0.867
Pavir.Ca00938 Panicum virgatum Pavir.Ca00938 I 0.850
VIT_10s0003g00560 Vitis vinifera VIT_10s0003g00560 I 0.816
TCM_029776 Theobroma cacao TCM_029776 I 0.816
cassava40675.m1 Manihot esculenta cassava40675.m1 I 0.816
Ca_00357 Cicer arietinum Ca_00357 I 0.816
Ca_06365 Cicer arietinum Ca_06365 I 0.816
Pm010370 Prunus mume Pm010370 I 0.816
PRUPE_ppa019841mg Prunus persica PRUPE_ppa019841mg I 0.816
Bra005464 Brassica rapa Bra005464 I 0.816
POPTR_0004s05090 Populus trichocarpa POPTR_0004s05090 I 0.816
GLYMA13G21860 Glycine max GLYMA13G21860 I 0.816
GLYMA13G24150 Glycine max GLYMA13G24150 I 0.816
CM1489.70.nc Lotus japonicus CM1489.70.nc I 0.816
MTR_2g015000 Medicago truncatula MTR_2g015000 I 0.816
GLYMA10G08030 Glycine max GLYMA10G08030 I 0.816
GLYMA07G32430 Glycine max GLYMA07G32430 I 0.816
cassava4506.m1 Manihot esculenta cassava4506.m1 I 0.816
WOX9 Arabidopsis lyrata Al_scaffold_0004_1872 I 0.816
Thhalv10016784m.g Eutrema salsugineum Thhalv10016784m.g I 0.816
POPTR_0011s05980 Populus trichocarpa POPTR_0011s05980 I 0.816
29900.m001555 Ricinus communis 29900.m001555 I 0.816
MDP0000729328 Malus domestica MDP0000729328 I 0.816
MDP0000232004 Malus domestica MDP0000232004 I 0.816
Gorai.009G165700 Gossypium raimondii Gorai.009G165700 I 0.816
orange1.1g036145m.g Citrus sinensis orange1.1g036145m.g I 0.816
WOX9 Arabidopsis thaliana AT2G33880 I 0.816
SapurV1A.0270s0270 Salix purpurea SapurV1A.0270s0270 I 0.816
AMTR_s00021p00189010 Amborella trichopoda AMTR_s00021p00189010 I 0.816
SapurV1A.0012s0880 Salix purpurea SapurV1A.0012s0880 I 0.816
gene29786-v1.0-hybrid Fragaria vesca gene29786-v1.0-hybrid I 0.816
Lus10005282.g Linum usitatissimum Lus10005282.g I 0.816
Bostr.23794s0703 Boechera stricta Bostr.23794s0703 I 0.816
Cagra.1195s0012 Capsella grandiflora Cagra.1195s0012 I 0.816
Bo3g027500 Brassica oleracea Bo3g027500 I 0.816
Bo4g041330 Brassica oleracea Bo4g041330 I 0.816
Aquca_036_00007 Aquilegia coerulea Aquca_036_00007 I 0.816
evm.TU.supercontig_7.12 Carica papaya evm.TU.supercontig_7.12 I 0.816
Carubv10025224m.g Capsella rubella Carubv10025224m.g I 0.816
Ciclev10015562m.g Citrus clementina Ciclev10015562m.g I 0.816
mgf001579m Mimulus guttatus mgf001579m I 0.815
Eucgr.D00577 Eucalyptus grandis Eucgr.D00577 I 0.815
OBART05G25900 Oryza barthii OBART05G25900 I 0.810
OGLUM05G27500 Oryza glumaepatula OGLUM05G27500 I 0.810
ONIVA05G27800 Oryza nivara ONIVA05G27800 I 0.810
ORGLA05G0223800 Oryza glaberrima ORGLA05G0223800 I 0.810
OS05G0564500 Oryza sativa OS05G0564500 I 0.810
OPUNC05G23480 Oryza punctata OPUNC05G23480 I 0.810
ORUFI05G27780 Oryza rufipogon ORUFI05G27780 I 0.810
BGIOSGA020366 Oryza indica BGIOSGA020366 I 0.810
PGSC0003DMG400010725 Solanum tuberosum PGSC0003DMG400010725 I 0.804
Solyc02g077390.1 Solanum lycopersicum Solyc02g077390.1 I 0.804
BGIOSGA001059 Oryza indica BGIOSGA001059 I 0.794
OGLUM01G29670 Oryza glumaepatula OGLUM01G29670 I 0.794
OMERI01G23480 Oryza meridionalis OMERI01G23480 I 0.794
Cla009819 Citrullus lanatus Cla009819 I 0.794
OBART01G25820 Oryza barthii OBART01G25820 I 0.794
Gorai.011G031300 Gossypium raimondii Gorai.011G031300 I 0.794
MTR_7g025010 Medicago truncatula MTR_7g025010 I 0.794
OS01G0667450 Oryza sativa OS01G0667450 I 0.794
Bra022960 Brassica rapa Bra022960 I 0.794
ONIVA01G29060 Oryza nivara ONIVA01G29060 I 0.794
Cucsa.046640 Cucumis sativus Cucsa.046640 I 0.794
ORGLA01G0211300 Oryza glaberrima ORGLA01G0211300 I 0.794
GSMUA_Achr8G27170_001 Musa acuminata GSMUA_Achr8G27170_001 I 0.794
GSMUA_Achr9G06660_001 Musa acuminata GSMUA_Achr9G06660_001 I 0.794
OB01G35000 Oryza brachyantha OB01G35000 I 0.794
LPERR01G22080 Leersia perrieri LPERR01G22080 I 0.794
Bo2g127670 Brassica oleracea Bo2g127670 I 0.784
Carubv10027735m.g Capsella rubella Carubv10027735m.g I 0.784
gene28935-v1.0-hybrid Fragaria vesca gene28935-v1.0-hybrid I 0.784
Cagra.2097s0014 Capsella grandiflora Cagra.2097s0014 I 0.784
WOX8 Arabidopsis lyrata scaffold_800245.1 I 0.784
Bra022008 Brassica rapa Bra022008 I 0.784
GRMZM2G031882 Zea mays GRMZM2G031882 I 0.782
GRMZM2G133972 Zea mays GRMZM2G133972 I 0.782
Pavir.Eb02702 Panicum virgatum Pavir.Eb02702 I 0.782
WOX8 Arabidopsis thaliana AT5G45980 I 0.779
Si004249m.g Setaria italica Si004249m.g I 0.777
F775_23099 Aegilops tauschii F775_23099 I 0.767
cassava4770.m1 Manihot esculenta cassava4770.m1 I 0.764
Thhalv10001099m.g Eutrema salsugineum Thhalv10001099m.g I 0.763
Bostr.8819s0128 Boechera stricta Bostr.8819s0128 I 0.762
PGSC0003DMG400027030 Solanum tuberosum PGSC0003DMG400027030 I 0.756
Solyc06g072890.1 Solanum lycopersicum Solyc06g072890.1 I 0.756
mgf017527m Mimulus guttatus mgf017527m I 0.750
MLOC_7925 Hordeum vulgare MLOC_7925 I 0.748
TRAES3BF022100010CFD_g Triticum aestivum TRAES3BF022100010CFD_g I 0.748
BRADI1G17420 Brachypodium distachyon BRADI1G17420 I 0.745
Traes_4AS_EC04D9E8A Triticum aestivum Traes_4AS_EC04D9E8A I 0.743
Cucsa.336980 Cucumis sativus Cucsa.336980 I 0.743
mgf016673m Mimulus guttatus mgf016673m I 0.743
TRIUR3_34876 Triticum urartu TRIUR3_34876 I 0.743
Traes_4DL_5E79CC79C Triticum aestivum Traes_4DL_5E79CC79C I 0.743
SapurV1A.1660s0010 Salix purpurea SapurV1A.1660s0010 I 0.743
Bo9g159820 Brassica oleracea Bo9g159820 I 0.743
Ca_08180 Cicer arietinum Ca_08180 I 0.743
Aquca_014_00949 Aquilegia coerulea Aquca_014_00949 I 0.743
Ca_19701 Cicer arietinum Ca_19701 I 0.743
LjT26C04.20.nd Lotus japonicus LjT26C04.20.nd I 0.743
Bra002108 Brassica rapa Bra002108 I 0.743
Bra023638 Brassica rapa Bra023638 I 0.743
cassava15562.m1 Manihot esculenta cassava15562.m1 I 0.743
30072.m000927 Ricinus communis 30072.m000927 I 0.743
VIT_08s0056g01200 Vitis vinifera VIT_08s0056g01200 I 0.743
Carubv10016081m.g Capsella rubella Carubv10016081m.g I 0.743
MDP0000524885 Malus domestica MDP0000524885 I 0.743
WOX12 Arabidopsis thaliana AT5G17810 I 0.743
MDP0000136426 Malus domestica MDP0000136426 I 0.743
WOX6 Oryza indica BGIOSGA010824 I 0.743
Gorai.007G346300 Gossypium raimondii Gorai.007G346300 I 0.743
Gorai.013G196400 Gossypium raimondii Gorai.013G196400 I 0.743
orange1.1g047211m.g Citrus sinensis orange1.1g047211m.g I 0.743
Pavir.Ba00249 Panicum virgatum Pavir.Ba00249 I 0.743
AMTR_s00119p00100440 Amborella trichopoda AMTR_s00119p00100440 I 0.743
WOX12 Arabidopsis lyrata Al_scaffold_0006_1694 I 0.743
Pavir.J33010 Panicum virgatum Pavir.J33010 I 0.743
Pavir.J23422 Panicum virgatum Pavir.J23422 I 0.743
Pavir.Fb01029 Panicum virgatum Pavir.Fb01029 I 0.743
Pavir.Ia03448 Panicum virgatum Pavir.Ia03448 I 0.743
gene30337-v1.0-hybrid Fragaria vesca gene30337-v1.0-hybrid I 0.743
BGIOSGA026413 Oryza indica BGIOSGA026413 I 0.743
Carubv10003719m.g Capsella rubella Carubv10003719m.g I 0.743
TRAES3BF079200050CFD_g Triticum aestivum TRAES3BF079200050CFD_g I 0.743
Cagra.6254s0027 Capsella grandiflora Cagra.6254s0027 I 0.743
Cagra.2098s0022 Capsella grandiflora Cagra.2098s0022 I 0.743
Bostr.19046s0084 Boechera stricta Bostr.19046s0084 I 0.743
Bo2g062660 Brassica oleracea Bo2g062660 I 0.743
Bo2g013980 Brassica oleracea Bo2g013980 I 0.743
Bo1g153650 Brassica oleracea Bo1g153650 I 0.743
WOX10 Oryza indica BGIOSGA027391 I 0.743
evm.TU.supercontig_73.3 Carica papaya evm.TU.supercontig_73.3 I 0.743
Bo11772s010 Brassica oleracea Bo11772s010 I 0.743
Eucgr.A02149 Eucalyptus grandis Eucgr.A02149 I 0.743
Ciclev10021682m.g Citrus clementina Ciclev10021682m.g I 0.743
Bo5g148780 Brassica oleracea Bo5g148780 I 0.743
Bra031980 Brassica rapa Bra031980 I 0.743
Thhalv10022222m.g Eutrema salsugineum Thhalv10022222m.g I 0.743
OMERI07G23310 Oryza meridionalis OMERI07G23310 I 0.743
OGLUM08G08120 Oryza glumaepatula OGLUM08G08120 I 0.743
OGLUM07G26700 Oryza glumaepatula OGLUM07G26700 I 0.743
OBART07G26670 Oryza barthii OBART07G26670 I 0.743
OGLUM03G15990 Oryza glumaepatula OGLUM03G15990 I 0.743
GLYMA19G29660 Glycine max GLYMA19G29660 I 0.743
ONIVA07G26430 Oryza nivara ONIVA07G26430 I 0.743
Traes_2DS_B5227B5F6 Triticum aestivum Traes_2DS_B5227B5F6 I 0.743
ORGLA07G0211000 Oryza glaberrima ORGLA07G0211000 I 0.743
OPUNC07G25100 Oryza punctata OPUNC07G25100 I 0.743
GLYMA03G01000 Glycine max GLYMA03G01000 I 0.743
ONIVA08G08030 Oryza nivara ONIVA08G08030 I 0.743
OPUNC03G15320 Oryza punctata OPUNC03G15320 I 0.743
OBART03G15820 Oryza barthii OBART03G15820 I 0.743
GRMZM2G162481 Zea mays GRMZM2G162481 I 0.743
GSMUA_Achr9G05010_001 Musa acuminata GSMUA_Achr9G05010_001 I 0.743
LPERR03G13850 Leersia perrieri LPERR03G13850 I 0.743
GSMUA_Achr8G01590_001 Musa acuminata GSMUA_Achr8G01590_001 I 0.743
GSMUA_Achr6G15910_001 Musa acuminata GSMUA_Achr6G15910_001 I 0.743
GSMUA_Achr10G12820_001 Musa acuminata GSMUA_Achr10G12820_001 I 0.743
GSMUA_Achr5G27730_001 Musa acuminata GSMUA_Achr5G27730_001 I 0.743
LPERR07G23470 Leersia perrieri LPERR07G23470 I 0.743
MLOC_65745 Hordeum vulgare MLOC_65745 I 0.743
MTR_7g086940 Medicago truncatula MTR_7g086940 I 0.743
OB08G17020 Oryza brachyantha OB08G17020 I 0.743
MTR_6g027390 Medicago truncatula MTR_6g027390 I 0.743
GRMZM2G170958 Zea mays GRMZM2G170958 I 0.743
MLOC_6669 Hordeum vulgare MLOC_6669 I 0.743
ORGLA08G0063600 Oryza glaberrima ORGLA08G0063600 I 0.743
ORGLA03G0151500 Oryza glaberrima ORGLA03G0151500 I 0.743
Sb02g043300 Sorghum bicolor Sb02g043300 I 0.743
LjSGA_037808.1 Lotus japonicus LjSGA_037808.1 I 0.743
ORUFI03G16410 Oryza rufipogon ORUFI03G16410 I 0.743
Sb01g036670 Sorghum bicolor Sb01g036670 I 0.743
Bra036446 Brassica rapa Bra036446 I 0.743
PRUPE_ppa026303mg Prunus persica PRUPE_ppa026303mg I 0.743
TCM_025805 Theobroma cacao TCM_025805 I 0.743
Sb07g007600 Sorghum bicolor Sb07g007600 I 0.743
GRMZM2G314064 Zea mays GRMZM2G314064 I 0.743
Si030836m.g Setaria italica Si030836m.g I 0.743
Si039112m.g Setaria italica Si039112m.g I 0.743
Si015065m.g Setaria italica Si015065m.g I 0.743
Thhalv10015651m.g Eutrema salsugineum Thhalv10015651m.g I 0.743
POPTR_0019s05730 Populus trichocarpa POPTR_0019s05730 I 0.743
Traes_2BS_8A1FE01EE Triticum aestivum Traes_2BS_8A1FE01EE I 0.743
OS03G0325600 Oryza sativa OS03G0325600 I 0.743
ORUFI08G08400 Oryza rufipogon ORUFI08G08400 I 0.743
ORUFI07G27650 Oryza rufipogon ORUFI07G27650 I 0.743
SapurV1A.0631s0110 Salix purpurea SapurV1A.0631s0110 I 0.743
F775_22811 Aegilops tauschii F775_22811 I 0.743
F775_11947 Aegilops tauschii F775_11947 I 0.743
POPTR_0013s06310 Populus trichocarpa POPTR_0013s06310 I 0.743
BRADI3G18800 Brachypodium distachyon BRADI3G18800 I 0.743
WOX10 Oryza sativa OS08G0242400 I 0.743
WOX11 Oryza sativa OS07G0684900 I 0.743
WOX11 Arabidopsis thaliana AT3G03660 D 0.742
WOX11 Arabidopsis lyrata fgenesh2_kg.3__312__AT3G03660.1 I 0.742
GSMUA_Achr10G05090_001 Musa acuminata GSMUA_Achr10G05090_001 I 0.741
Pm025458 Prunus mume Pm025458 I 0.723
MTR_4g088080 Medicago truncatula MTR_4g088080 I 0.723
TRIUR3_34808 Triticum urartu TRIUR3_34808 I 0.722
MTR_4g088070 Medicago truncatula MTR_4g088070 I 0.714
LPERR07G23520 Leersia perrieri LPERR07G23520 I 0.710
PDK_20s1465351g003 Phoenix dactylifera PDK_20s1465351g003 I 0.705
GSMUA_Achr3G09460_001 Musa acuminata GSMUA_Achr3G09460_001 I 0.698
PDK_20s13009443g001 Phoenix dactylifera PDK_20s13009443g001 I 0.686
Pavir.Ib01521 Panicum virgatum Pavir.Ib01521 I 0.675
OS07G0533201 Oryza sativa OS07G0533201 N 0.656
ORGLA07G0240100 Oryza glaberrima ORGLA07G0240100 N 0.656
OMERI07G13960 Oryza meridionalis OMERI07G13960 N 0.656
Bo9g070070 Brassica oleracea Bo9g070070 I 0.654
Bra017448 Brassica rapa Bra017448 I 0.654
OB10G14840 Oryza brachyantha OB10G14840 I 0.648
SELMODRAFT_123325 Selaginella moellendorffii SELMODRAFT_123325 I 0.647
SELMODRAFT_115439 Selaginella moellendorffii SELMODRAFT_115439 I 0.647
Bo8g106350 Brassica oleracea Bo8g106350 I 0.614
Bra026791 Brassica rapa Bra026791 I 0.614
Thhalv10009654m.g Eutrema salsugineum Thhalv10009654m.g I 0.614
mgf023275m Mimulus guttatus mgf023275m I 0.607