scaffold_403638.1 (Arabidopsis lyrata)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 scaffold_403638.1 T223032_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATHB-7
M02043_2.00
Arabidopsis thaliana
NHWTGATTGN

NCAATCAWDN
PBM
Weirauch et al.(2014)
pTH8090
0.867 1.000
ATHB-7
M06911_2.00
Arabidopsis thaliana
NHYCAATCATTSW

WSAATGATTGRDN
Dap-seq
OMalley et al.(2016)
ATHB7_col_a
0.867 1.000
ATHB-12
M00865_2.00
Arabidopsis thaliana
NNNNNNNN

NNNNNNNN
PBM
Franco-Zorrilla et al.(2014)
ATHB12
0.666 0.877
ATHB-12
M02045_2.00
Arabidopsis thaliana
BHWWWWWWDV

BHWWWWWWDV
PBM
Weirauch et al.(2014)
pTH7207
0.666 0.877
ATHB-5
M06932_2.00
Arabidopsis thaliana
NYAATMATTND

HNAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_col_a
0.613 0.632
ATHB-5
M06933_2.00
Arabidopsis thaliana
NYAATMATTN

NAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a
0.613 0.632
ATHB-5
M02684_2.00
Arabidopsis thaliana
CAATVATTGVVSV

BSBBCAATBATTG
SELEX
Mathelier et al.(2014)
MA0110.2
0.613 0.632
ATHB-5
M10630_2.00
Arabidopsis thaliana
CAATVATTG

CAATBATTG
Transfac
Matys et al.(2006)
P$ATHB5_01
0.613 0.632
ATHB-13
M06900_2.00
Arabidopsis thaliana
HYAATAATTDD

HHAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB13_col_a
0.601 0.614
ATHB-13
M06901_2.00
Arabidopsis thaliana
NYAATAATTRW

WYAATTATTRN
Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a
0.601 0.614
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_403638.1 Homeodomain 30 86

Links

Other Homeodomain family TFs
Other Arabidopsis lyrata TFs

308 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.000
Carubv10009310m.g Capsella rubella Carubv10009310m.g I 0.000
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I 0.000
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I 0.000
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I 0.000
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I 0.000
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.000
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.000
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.000
Carubv10015798m.g Capsella rubella Carubv10015798m.g I 0.000
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.000
Thhalv10011582m.g Eutrema salsugineum Thhalv10011582m.g I 0.000
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.000
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.000
MDP0000281471 Malus domestica MDP0000281471 I 0.000
MDP0000255104 Malus domestica MDP0000255104 I 0.000
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.000
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.000
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.000
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.000
29727.m000472 Ricinus communis 29727.m000472 I 0.000
Bo6g050870 Brassica oleracea Bo6g050870 I 0.000
Bra014370 Brassica rapa Bra014370 I 0.000
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I 0.000
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I 0.000
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.000
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.000
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.000
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I 0.000
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.000
Pm013209 Prunus mume Pm013209 I 0.000
Cla015773 Citrullus lanatus Cla015773 I 0.000
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I 0.000
TCM_029209 Theobroma cacao TCM_029209 I 0.000
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.000
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.000
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.000
VIT_09s0002g00720 Vitis vinifera VIT_09s0002g00720 N 0.000
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N 0.000
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N 0.000
AMTR_s00007p00263040 Amborella trichopoda AMTR_s00007p00263040 N 0.000
PK22475.1 Cannabis sativa PK22475.1 N 0.000
POPTR_0001s06330 Populus trichocarpa POPTR_0001s06330 N 0.000