SELMODRAFT_438787 (Selaginella moellendorffii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 SELMODRAFT_438787 T223106_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GRMZM2G038252
M02137_2.00 		Zea mays
HTRATTGV
BCAATYAD		 PBM
Weirauch et al.(2014)
pTH6141 		0.713 0.596
WOX13
M02049_2.00 		Arabidopsis thaliana
YTGATTGA
TCAATCAR		 PBM
Weirauch et al.(2014)
pTH6461 		0.713 0.544
WOX13
M00866_2.00 		Arabidopsis thaliana
NNTGATTGAN
NTCAATCANN		 PBM
Franco-Zorrilla et al.(2014)
WOX13 		0.713 0.544
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFJ34398 Homeodomain 107 168

Links

Other Homeodomain family TFs
Other Selaginella moellendorffii TFs

174 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SELMODRAFT_451355 Selaginella moellendorffii SELMODRAFT_451355 I 0.867
Thhalv10009917m.g Eutrema salsugineum Thhalv10009917m.g I 0.750
gene20491-v1.0-hybrid Fragaria vesca gene20491-v1.0-hybrid I 0.749
Aquca_007_00901 Aquilegia coerulea Aquca_007_00901 I 0.747
GSMUA_Achr4G29470_001 Musa acuminata GSMUA_Achr4G29470_001 I 0.745
evm.TU.supercontig_26.173 Carica papaya evm.TU.supercontig_26.173 I 0.740
Lus10016026.g Linum usitatissimum Lus10016026.g I 0.739
fgenesh1_pg.scaffold_217000007 Physcomitrella patens fgenesh1_pg.scaffold_217000007 I 0.735
WOX10 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001761 I 0.734
WOX14 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001881 I 0.733
Carubv10012447m.g Capsella rubella Carubv10012447m.g I 0.733
Bostr.3717s0001 Boechera stricta Bostr.3717s0001 I 0.733
Bra025839 Brassica rapa Bra025839 I 0.733
Cagra.6160s0026 Capsella grandiflora Cagra.6160s0026 I 0.733
Cagra.6160s0025 Capsella grandiflora Cagra.6160s0025 I 0.733
Carubv10010349m.g Capsella rubella Carubv10010349m.g I 0.733
Bo5g030590 Brassica oleracea Bo5g030590 I 0.733
WOX14 Arabidopsis thaliana AT1G20700 I 0.733
TCM_034409 Theobroma cacao TCM_034409 I 0.721
chr5.CM0180.70.nc Lotus japonicus chr5.CM0180.70.nc I 0.720
AMTR_s00044p00155390 Amborella trichopoda AMTR_s00044p00155390 I 0.719
Gorai.007G372000 Gossypium raimondii Gorai.007G372000 I 0.719
Gorai.004G038300 Gossypium raimondii Gorai.004G038300 I 0.719
F775_11596 Aegilops tauschii F775_11596 I 0.717
Ciclev10002354m.g Citrus clementina Ciclev10002354m.g I 0.717
TRAES3BF057600060CFD_g Triticum aestivum TRAES3BF057600060CFD_g I 0.717
Traes_3DL_6B1815F7D Triticum aestivum Traes_3DL_6B1815F7D I 0.717
MLOC_56124 Hordeum vulgare MLOC_56124 I 0.717
Traes_3DS_97BBFFA03 Triticum aestivum Traes_3DS_97BBFFA03 I 0.717
TRIUR3_23636 Triticum urartu TRIUR3_23636 I 0.717
Traes_3AL_D0053C177 Triticum aestivum Traes_3AL_D0053C177 I 0.717
BRADI2G53390 Brachypodium distachyon BRADI2G53390 I 0.717
orange1.1g026809m.g Citrus sinensis orange1.1g026809m.g I 0.717
TRAES3BF091200100CFD_g Triticum aestivum TRAES3BF091200100CFD_g I 0.716
gw1.224.39.1 Physcomitrella patens gw1.224.39.1 I 0.716
gw1.29.10.1 Physcomitrella patens gw1.29.10.1 I 0.716
TRAES3BF091200090CFD_g Triticum aestivum TRAES3BF091200090CFD_g I 0.716
WOX10 Arabidopsis thaliana AT1G20710 I 0.716
Gorai.003G002200 Gossypium raimondii Gorai.003G002200 I 0.715
Bra017720 Brassica rapa Bra017720 I 0.715
Thhalv10025989m.g Eutrema salsugineum Thhalv10025989m.g I 0.715
Pm022951 Prunus mume Pm022951 I 0.713
Cla009089 Citrullus lanatus Cla009089 I 0.713
VIT_18s0122g01140 Vitis vinifera VIT_18s0122g01140 I 0.713
HB-4 Arabidopsis lyrata scaffold_700564.1 I 0.713
Si002508m.g Setaria italica Si002508m.g I 0.713
Lus10040447.g Linum usitatissimum Lus10040447.g I 0.713
Pm026793 Prunus mume Pm026793 I 0.713
TCM_000062 Theobroma cacao TCM_000062 I 0.713
Sb03g038080 Sorghum bicolor Sb03g038080 I 0.713
PRUPE_ppa021400mg Prunus persica PRUPE_ppa021400mg I 0.713
mgf006573m Mimulus guttatus mgf006573m I 0.713
Pavir.Ea03245 Panicum virgatum Pavir.Ea03245 I 0.713
Eucgr.I02222 Eucalyptus grandis Eucgr.I02222 I 0.713
Ciclev10026199m.g Citrus clementina Ciclev10026199m.g I 0.713
evm.TU.supercontig_6.368 Carica papaya evm.TU.supercontig_6.368 I 0.713
gene13035-v1.0-hybrid Fragaria vesca gene13035-v1.0-hybrid I 0.713
MDP0000316517 Malus domestica MDP0000316517 I 0.713
orange1.1g022516m.g Citrus sinensis orange1.1g022516m.g I 0.713
Gorai.001G199200 Gossypium raimondii Gorai.001G199200 I 0.713
PRUPE_ppa011225mg Prunus persica PRUPE_ppa011225mg I 0.713
Carubv10005217m.g Capsella rubella Carubv10005217m.g I 0.713
MDP0000304650 Malus domestica MDP0000304650 I 0.713
Cucsa.323040 Cucumis sativus Cucsa.323040 I 0.713
cassava23423.valid.m1 Manihot esculenta cassava23423.valid.m1 I 0.713
PK14252.1 Cannabis sativa PK14252.1 I 0.713
Bostr.7867s1413 Boechera stricta Bostr.7867s1413 I 0.713
Pavir.Eb03552 Panicum virgatum Pavir.Eb03552 I 0.713
SapurV1A.1240s0080 Salix purpurea SapurV1A.1240s0080 I 0.713
Cagra.2350s0096 Capsella grandiflora Cagra.2350s0096 I 0.713
29830.m001452 Ricinus communis 29830.m001452 I 0.713
Solyc02g082670.2 Solanum lycopersicum Solyc02g082670.2 I 0.713
LPERR01G30370 Leersia perrieri LPERR01G30370 I 0.713
GSMUA_AchrUn_randomG18610_001 Musa acuminata GSMUA_AchrUn_randomG18610_001 I 0.713
GSMUA_Achr4G25530_001 Musa acuminata GSMUA_Achr4G25530_001 I 0.713
GSMUA_Achr1G17980_001 Musa acuminata GSMUA_Achr1G17980_001 I 0.713
Bo7g117480 Brassica oleracea Bo7g117480 I 0.713
MTR_3g115620 Medicago truncatula MTR_3g115620 I 0.713
Bo1g006370 Brassica oleracea Bo1g006370 I 0.713
OLONG_016784 Oryza longistaminata OLONG_016784 I 0.713
OB01G44030 Oryza brachyantha OB01G44030 I 0.713
GSMUA_Achr10G07260_001 Musa acuminata GSMUA_Achr10G07260_001 I 0.713
GRMZM5G805026 Zea mays GRMZM5G805026 I 0.713
GLYMA10G43580 Glycine max GLYMA10G43580 I 0.713
GLYMA06G01940 Glycine max GLYMA06G01940 I 0.713
GLYMA04G01830 Glycine max GLYMA04G01830 I 0.713
GLYMA02G10410 Glycine max GLYMA02G10410 I 0.713
GLYMA18G52491 Glycine max GLYMA18G52491 I 0.713
GLYMA20G23220 Glycine max GLYMA20G23220 I 0.713
Bra011623 Brassica rapa Bra011623 I 0.713
GRMZM2G069274 Zea mays GRMZM2G069274 I 0.713
GRMZM2G038252 Zea mays GRMZM2G038252 D 0.713
OMERI01G32310 Oryza meridionalis OMERI01G32310 I 0.713
OBART01G35170 Oryza barthii OBART01G35170 I 0.713
ORGLA01G0290300 Oryza glaberrima ORGLA01G0290300 I 0.713
WOX8 Oryza sativa OS01G0818400 I 0.713
WOX13 Arabidopsis thaliana AT4G35550 D 0.713
ORUFI01G38500 Oryza rufipogon ORUFI01G38500 I 0.713
BGIOSGA004695 Oryza indica BGIOSGA004695 I 0.713
PGSC0003DMG400001565 Solanum tuberosum PGSC0003DMG400001565 I 0.713
HB-4 Populus trichocarpa POPTR_0005s10480 I 0.713
OPUNC01G34140 Oryza punctata OPUNC01G34140 I 0.713
ONIVA01G40180 Oryza nivara ONIVA01G40180 I 0.713
chr1.CM0113.620.nc Lotus japonicus chr1.CM0113.620.nc I 0.712
MTR_1g115315 Medicago truncatula MTR_1g115315 I 0.712
Ca_04823 Cicer arietinum Ca_04823 I 0.712
Ca_18623 Cicer arietinum Ca_18623 I 0.712
GSMUA_Achr5G11080_001 Musa acuminata GSMUA_Achr5G11080_001 I 0.711
PDK_20s1408301g001 Phoenix dactylifera PDK_20s1408301g001 I 0.709
MDP0000224466 Malus domestica MDP0000224466 I 0.708
MDP0000851699 Malus domestica MDP0000851699 I 0.708
SELMODRAFT_407157 Selaginella moellendorffii SELMODRAFT_407157 I 0.707
SELMODRAFT_404178 Selaginella moellendorffii SELMODRAFT_404178 I 0.707
Bo09314s010 Brassica oleracea Bo09314s010 I 0.702
PK07880.1 Cannabis sativa PK07880.1 I 0.702
Cla023819 Citrullus lanatus Cla023819 I 0.702
Cucsa.272210 Cucumis sativus Cucsa.272210 I 0.702
Bo7g061410 Brassica oleracea Bo7g061410 I 0.702
VIT_04s0044g00150 Vitis vinifera VIT_04s0044g00150 I 0.702
LjT41B11.90.nd Lotus japonicus LjT41B11.90.nd I 0.701
Bostr.7128s0661 Boechera stricta Bostr.7128s0661 I 0.701
Ca_19383 Cicer arietinum Ca_19383 I 0.701
Ca_19386 Cicer arietinum Ca_19386 I 0.701
Lus10023561.g Linum usitatissimum Lus10023561.g I 0.701
cassava39214.m1 Manihot esculenta cassava39214.m1 I 0.701
30170.m014389 Ricinus communis 30170.m014389 I 0.699
POPTR_0002s00980 Populus trichocarpa POPTR_0002s00980 I 0.698
SapurV1A.0266s0300 Salix purpurea SapurV1A.0266s0300 I 0.698
SapurV1A.0016s0590 Salix purpurea SapurV1A.0016s0590 I 0.698
POPTR_0005s27410 Populus trichocarpa POPTR_0005s27410 I 0.698
Traes_3AS_9079D6B71 Triticum aestivum Traes_3AS_9079D6B71 I 0.695
Thhalv10008824m.g Eutrema salsugineum Thhalv10008824m.g I 0.689
GSMUA_Achr7G04050_001 Musa acuminata GSMUA_Achr7G04050_001 I 0.684
MTR_7g023810 Medicago truncatula MTR_7g023810 I 0.679
Aquca_015_00333 Aquilegia coerulea Aquca_015_00333 I 0.676
Bra010531 Brassica rapa Bra010531 I 0.675
Bo3g155580 Brassica oleracea Bo3g155580 I 0.675
GSMUA_Achr3G14840_001 Musa acuminata GSMUA_Achr3G14840_001 I 0.673
EuGene.0600010372 Micromonas sp RCC299 EuGene.0600010372 I 0.668
VIT_04s0044g00160 Vitis vinifera VIT_04s0044g00160 I 0.645
SELMODRAFT_115439 Selaginella moellendorffii SELMODRAFT_115439 I 0.643
SELMODRAFT_123325 Selaginella moellendorffii SELMODRAFT_123325 I 0.643
SELMODRAFT_451353 Selaginella moellendorffii SELMODRAFT_451353 I 0.635
SELMODRAFT_84885 Selaginella moellendorffii SELMODRAFT_84885 I 0.633
estExt_fgenesh1_pg.C_90244 Micromonas pusilla estExt_fgenesh1_pg.C_90244 I 0.632
mgf024314m Mimulus guttatus mgf024314m N 0.630
Cucsa.379650 Cucumis sativus Cucsa.379650 I 0.626
Cla013483 Citrullus lanatus Cla013483 I 0.626
gene32456-v1.0-hybrid Fragaria vesca gene32456-v1.0-hybrid I 0.622
mgf023746m Mimulus guttatus mgf023746m I 0.613
OPUNC01G36520 Oryza punctata OPUNC01G36520 I 0.607
ONIVA01G14610 Oryza nivara ONIVA01G14610 I 0.607
OMERI01G34630 Oryza meridionalis OMERI01G34630 I 0.607
TRIUR3_26391 Triticum urartu TRIUR3_26391 I 0.607
ORGLA01G0314800 Oryza glaberrima ORGLA01G0314800 I 0.607
BGIOSGA000469 Oryza indica BGIOSGA000469 I 0.607
Sb03g040210 Sorghum bicolor Sb03g040210 I 0.607
WOX9 Oryza sativa OS01G0854500 I 0.607
Si002900m.g Setaria italica Si002900m.g I 0.607
ORUFI01G41010 Oryza rufipogon ORUFI01G41010 I 0.607
OLONG_007155 Oryza longistaminata OLONG_007155 I 0.607
OGLUM01G41580 Oryza glumaepatula OGLUM01G41580 I 0.607
LPERR01G32330 Leersia perrieri LPERR01G32330 I 0.607
GRMZM2G478396 Zea mays GRMZM2G478396 I 0.607
GRMZM2G116063 Zea mays GRMZM2G116063 I 0.607
F775_30123 Aegilops tauschii F775_30123 I 0.607
BRADI2G55270 Brachypodium distachyon BRADI2G55270 I 0.607
MLOC_74758 Hordeum vulgare MLOC_74758 I 0.607
Pavir.J34036 Panicum virgatum Pavir.J34036 I 0.607
OB01G46390 Oryza brachyantha OB01G46390 I 0.607
OBART01G37660 Oryza barthii OBART01G37660 I 0.607
Pavir.Ea03790 Panicum virgatum Pavir.Ea03790 I 0.607
Bra012245 Brassica rapa Bra012245 I 0.603
PDK_20s1363982g001 Phoenix dactylifera PDK_20s1363982g001 I 0.601