CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SELMODRAFT_451276
(
Selaginella moellendorffii
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
SELMODRAFT_451276
T223121_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
KNOX3_HORVU
M10790_2.00
Hordeum vulgare
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$KNOX3_01
0.807
0.804
KNAT6
M02037_2.00
Arabidopsis thaliana
NNWGACNNNN
NNNNGTCWNN
PBM
Weirauch et al.(2014)
pTH7296
0.791
0.750
GRMZM2G135447
M02139_2.00
Zea mays
DTGACRKS
SMYGTCAH
PBM
Weirauch et al.(2014)
pTH6328
0.784
0.750
GRMZM2G087741
M02138_2.00
Zea mays
NNTGACRKCN
NGMYGTCANN
PBM
Weirauch et al.(2014)
pTH5816
0.750
0.696
PK25034.1
M01254_2.00
Cannabis sativa
NNTGACRKBN
NVMYGTCANN
PBM
Lambert et al.(2019)
pTH11259
0.650
0.679
TGIF2LX
M03171_2.00
Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA
SELEX
Jolma et al.(2013)
TGIF2LX_1
0.606
0.464
TGIF2LX
M05191_2.00
Homo sapiens
TGACABVTGTCA
TGACABVTGTCA
SELEX
Yin et al.(2017)
TGIF2LX_eDBD_HT-SELEX
0.606
0.464
TGIF2LX
M05193_2.00
Homo sapiens
TGACASSTGTCA
TGACASSTGTCA
SELEX
Yin et al.(2017)
TGIF2LX_FL_HT-SELEX
0.606
0.464
TGIF2LX
M05192_2.00
Homo sapiens
TGACABVTGTCA
TGACABVTGTCA
SELEX
Yin et al.(2017)
TGIF2LX_eDBD_Methyl-HT-SELEX
0.606
0.464
TGIF2LX
M05194_2.00
Homo sapiens
TGACASSTGTCA
TGACASSTGTCA
SELEX
Yin et al.(2017)
TGIF2LX_FL_Methyl-HT-SELEX
0.606
0.464
TGIF2LY
M05313_2.00
Homo sapiens
TGACABVTGTCA
TGACABVTGTCA
SELEX
Yin et al.(2017)
TGIF2LY_eDBD_HT-SELEX
0.606
0.446
TGIF2LY
M05314_2.00
Homo sapiens
YGACABVTGTCR
YGACABVTGTCR
SELEX
Yin et al.(2017)
TGIF2LY_eDBD_Methyl-HT-SELEX
0.606
0.446
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EFJ21442
Homeodomain
236
294
KKKKGKLPKESRQQLLDWWSQHQDHPYPNENQKSNLAQSTGLDPKQINNWFINQRKRHW
EFJ21443
Homeodomain
230
288
KKKKGKLPKESRQQLLDWWSQHQDHPYPNENQKSNLAQSTGLDPKQINNWFINQRKRHW
Links
Other
Homeodomain
family TFs
Other
Selaginella moellendorffii
TFs
318 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy