SELMODRAFT_84885 (Selaginella moellendorffii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 SELMODRAFT_84885 T223138_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GRMZM2G038252
M02137_2.00
Zea mays
HTRATTGV

BCAATYAD
PBM
Weirauch et al.(2014)
pTH6141
0.656 0.404
WOX13
M02049_2.00
Arabidopsis thaliana
YTGATTGA

TCAATCAR
PBM
Weirauch et al.(2014)
pTH6461
0.656 0.368
WOX13
M00866_2.00
Arabidopsis thaliana
NNTGATTGAN

NTCAATCANN
PBM
Franco-Zorrilla et al.(2014)
WOX13
0.656 0.368
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFJ33357 Homeodomain 71 132

Links

Other Homeodomain family TFs
Other Selaginella moellendorffii TFs

256 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
28102.m000106 Ricinus communis 28102.m000106 I 0.604
29816.m000691 Ricinus communis 29816.m000691 I 0.604
29830.m001452 Ricinus communis 29830.m001452 I 0.656
30170.m014389 Ricinus communis 30170.m014389 I 0.658
AMTR_s00010p00122680 Amborella trichopoda AMTR_s00010p00122680 I 0.604
AMTR_s00044p00155390 Amborella trichopoda AMTR_s00044p00155390 I 0.658
Aquca_007_00901 Aquilegia coerulea Aquca_007_00901 I 0.658
Aquca_015_00333 Aquilegia coerulea Aquca_015_00333 I 0.625
Aquca_091_00003 Aquilegia coerulea Aquca_091_00003 I 0.604
BGIOSGA004695 Oryza indica BGIOSGA004695 I 0.656
Bo09314s010 Brassica oleracea Bo09314s010 I 0.664
Bo1g006370 Brassica oleracea Bo1g006370 I 0.656
Bo3g071360 Brassica oleracea Bo3g071360 I 0.604
Bo3g155580 Brassica oleracea Bo3g155580 I 0.618
Bo5g030590 Brassica oleracea Bo5g030590 I 0.664
Bo5g121370 Brassica oleracea Bo5g121370 I 0.604
Bo7g061410 Brassica oleracea Bo7g061410 I 0.664
Bo7g117480 Brassica oleracea Bo7g117480 I 0.656
Bostr.19424s0870 Boechera stricta Bostr.19424s0870 I 0.604
Bostr.3717s0001 Boechera stricta Bostr.3717s0001 I 0.664
Bostr.7128s0661 Boechera stricta Bostr.7128s0661 I 0.664
Bostr.7867s1413 Boechera stricta Bostr.7867s1413 I 0.656
Bra001694 Brassica rapa Bra001694 I 0.604
Bra010531 Brassica rapa Bra010531 I 0.618
Bra011623 Brassica rapa Bra011623 I 0.656
Bra017720 Brassica rapa Bra017720 I 0.658
Bra022267 Brassica rapa Bra022267 I 0.604
Bra025839 Brassica rapa Bra025839 I 0.664
BRADI2G53390 Brachypodium distachyon BRADI2G53390 I 0.656
Cagra.0456s0008 Capsella grandiflora Cagra.0456s0008 I 0.604
Cagra.2350s0096 Capsella grandiflora Cagra.2350s0096 I 0.656
Cagra.6160s0025 Capsella grandiflora Cagra.6160s0025 I 0.664
Cagra.6160s0026 Capsella grandiflora Cagra.6160s0026 I 0.664
Carubv10005217m.g Capsella rubella Carubv10005217m.g I 0.656
Carubv10010349m.g Capsella rubella Carubv10010349m.g I 0.664
Carubv10012447m.g Capsella rubella Carubv10012447m.g I 0.664
Carubv10013929m.g Capsella rubella Carubv10013929m.g I 0.604
cassava13526.valid.m1 Manihot esculenta cassava13526.valid.m1 I 0.604
cassava16590.m1 Manihot esculenta cassava16590.m1 I 0.604
cassava23423.valid.m1 Manihot esculenta cassava23423.valid.m1 I 0.656
cassava32199.m1 Manihot esculenta cassava32199.m1 I 0.604
cassava39214.m1 Manihot esculenta cassava39214.m1 I 0.663
cassava41581.m1 Manihot esculenta cassava41581.m1 I 0.604
Ca_04823 Cicer arietinum Ca_04823 I 0.656
Ca_06508 Cicer arietinum Ca_06508 I 0.604
Ca_10352 Cicer arietinum Ca_10352 I 0.604
Ca_18623 Cicer arietinum Ca_18623 I 0.656
Ca_19383 Cicer arietinum Ca_19383 I 0.656
Ca_19386 Cicer arietinum Ca_19386 I 0.656
chr1.CM0113.620.nc Lotus japonicus chr1.CM0113.620.nc I 0.656
chr4.CM0042.2350.nc Lotus japonicus chr4.CM0042.2350.nc I 0.604
chr5.CM0180.70.nc Lotus japonicus chr5.CM0180.70.nc I 0.676
Ciclev10002354m.g Citrus clementina Ciclev10002354m.g I 0.659
Ciclev10008783m.g Citrus clementina Ciclev10008783m.g I 0.604
Ciclev10017657m.g Citrus clementina Ciclev10017657m.g I 0.604
Ciclev10026199m.g Citrus clementina Ciclev10026199m.g I 0.656
Ciclev10030293m.g Citrus clementina Ciclev10030293m.g I 0.604
Cla009089 Citrullus lanatus Cla009089 I 0.656
Cla018739 Citrullus lanatus Cla018739 I 0.604
Cla019215 Citrullus lanatus Cla019215 I 0.604
Cla023819 Citrullus lanatus Cla023819 I 0.656
Cucsa.111520 Cucumis sativus Cucsa.111520 I 0.604
Cucsa.121900 Cucumis sativus Cucsa.121900 I 0.604
Cucsa.272210 Cucumis sativus Cucsa.272210 I 0.656
Cucsa.323040 Cucumis sativus Cucsa.323040 I 0.656
estExt_fgenesh1_pg.C_90244 Micromonas pusilla estExt_fgenesh1_pg.C_90244 I 0.640
Eucgr.B00945 Eucalyptus grandis Eucgr.B00945 I 0.604
Eucgr.I02222 Eucalyptus grandis Eucgr.I02222 I 0.656
EuGene.0600010372 Micromonas sp RCC299 EuGene.0600010372 I 0.660
evm.TU.supercontig_26.173 Carica papaya evm.TU.supercontig_26.173 I 0.664
evm.TU.supercontig_3.402 Carica papaya evm.TU.supercontig_3.402 I 0.604
evm.TU.supercontig_6.368 Carica papaya evm.TU.supercontig_6.368 I 0.656
evm.TU.supercontig_65.159 Carica papaya evm.TU.supercontig_65.159 I 0.604
F775_11596 Aegilops tauschii F775_11596 I 0.656
F775_52565 Aegilops tauschii F775_52565 I 0.636
fgenesh1_pg.scaffold_217000007 Physcomitrella patens fgenesh1_pg.scaffold_217000007 I 0.656
fgenesh2_kg.143__1__AT3G18010.1 Arabidopsis lyrata fgenesh2_kg.143__1__AT3G18010.1 I 0.604
fgenesh2_kg.3__1989__AT3G18010.1 Arabidopsis lyrata fgenesh2_kg.3__1989__AT3G18010.1 I 0.604
gene09389-v1.0-hybrid Fragaria vesca gene09389-v1.0-hybrid I 0.604
gene13035-v1.0-hybrid Fragaria vesca gene13035-v1.0-hybrid I 0.656
gene20491-v1.0-hybrid Fragaria vesca gene20491-v1.0-hybrid I 0.676
gene30464-v1.0-hybrid Fragaria vesca gene30464-v1.0-hybrid I 0.604
GLYMA02G10410 Glycine max GLYMA02G10410 I 0.656
GLYMA04G01830 Glycine max GLYMA04G01830 I 0.656
GLYMA05G33850 Glycine max GLYMA05G33850 I 0.604
GLYMA06G01940 Glycine max GLYMA06G01940 I 0.656
GLYMA07G11372 Glycine max GLYMA07G11372 I 0.604
GLYMA07G34425 Glycine max GLYMA07G34425 I 0.604
GLYMA08G05831 Glycine max GLYMA08G05831 I 0.604
GLYMA09G30831 Glycine max GLYMA09G30831 I 0.604
GLYMA10G43580 Glycine max GLYMA10G43580 I 0.656
GLYMA18G52491 Glycine max GLYMA18G52491 I 0.656
GLYMA20G02161 Glycine max GLYMA20G02161 I 0.604
GLYMA20G23220 Glycine max GLYMA20G23220 I 0.656
Gorai.001G199200 Gossypium raimondii Gorai.001G199200 I 0.656
Gorai.002G178400 Gossypium raimondii Gorai.002G178400 I 0.604
Gorai.003G002200 Gossypium raimondii Gorai.003G002200 I 0.658
Gorai.004G038300 Gossypium raimondii Gorai.004G038300 I 0.664
Gorai.007G372000 Gossypium raimondii Gorai.007G372000 I 0.696
Gorai.008G289800 Gossypium raimondii Gorai.008G289800 I 0.604
Gorai.009G103500 Gossypium raimondii Gorai.009G103500 I 0.604
GRMZM2G038252 Zea mays GRMZM2G038252 D 0.656
GRMZM2G069028 Zea mays GRMZM2G069028 I 0.636
GRMZM2G069274 Zea mays GRMZM2G069274 I 0.656
GRMZM5G805026 Zea mays GRMZM5G805026 I 0.656
GSMUA_Achr10G07260_001 Musa acuminata GSMUA_Achr10G07260_001 I 0.688
GSMUA_Achr1G17980_001 Musa acuminata GSMUA_Achr1G17980_001 I 0.656
GSMUA_Achr2G16080_001 Musa acuminata GSMUA_Achr2G16080_001 I 0.636
GSMUA_Achr3G14840_001 Musa acuminata GSMUA_Achr3G14840_001 I 0.629
GSMUA_Achr4G25530_001 Musa acuminata GSMUA_Achr4G25530_001 I 0.656
GSMUA_Achr4G29470_001 Musa acuminata GSMUA_Achr4G29470_001 I 0.631
GSMUA_Achr4G30610_001 Musa acuminata GSMUA_Achr4G30610_001 I 0.636
GSMUA_Achr5G11080_001 Musa acuminata GSMUA_Achr5G11080_001 I 0.658
GSMUA_Achr7G04050_001 Musa acuminata GSMUA_Achr7G04050_001 I 0.634
GSMUA_Achr7G18230_001 Musa acuminata GSMUA_Achr7G18230_001 I 0.636
GSMUA_Achr8G02040_001 Musa acuminata GSMUA_Achr8G02040_001 I 0.631
GSMUA_Achr9G04090_001 Musa acuminata GSMUA_Achr9G04090_001 I 0.636
GSMUA_AchrUn_randomG18610_001 Musa acuminata GSMUA_AchrUn_randomG18610_001 I 0.656
gw1.224.39.1 Physcomitrella patens gw1.224.39.1 I 0.656
gw1.29.10.1 Physcomitrella patens gw1.29.10.1 I 0.656
HB-4 Arabidopsis lyrata scaffold_700564.1 I 0.656
HB-4 Populus trichocarpa POPTR_0005s10480 I 0.656
LjSGA_059316.1 Lotus japonicus LjSGA_059316.1 I 0.605
LjSGA_115909.1 Lotus japonicus LjSGA_115909.1 I 0.604
LjT41B11.90.nd Lotus japonicus LjT41B11.90.nd I 0.656
LPERR01G30370 Leersia perrieri LPERR01G30370 I 0.656
LPERR11G00110 Leersia perrieri LPERR11G00110 I 0.636
LPERR12G00390 Leersia perrieri LPERR12G00390 I 0.636
Lus10016026.g Linum usitatissimum Lus10016026.g I 0.677
Lus10018011.g Linum usitatissimum Lus10018011.g I 0.604
Lus10023561.g Linum usitatissimum Lus10023561.g I 0.656
Lus10040447.g Linum usitatissimum Lus10040447.g I 0.656
Lus10042007.g Linum usitatissimum Lus10042007.g I 0.604
MDP0000144307 Malus domestica MDP0000144307 I 0.604
MDP0000219162 Malus domestica MDP0000219162 I 0.604
MDP0000224466 Malus domestica MDP0000224466 I 0.651
MDP0000304650 Malus domestica MDP0000304650 I 0.656
MDP0000316517 Malus domestica MDP0000316517 I 0.656
MDP0000445859 Malus domestica MDP0000445859 I 0.604
MDP0000851699 Malus domestica MDP0000851699 I 0.651
mgf006573m Mimulus guttatus mgf006573m I 0.656
mgf021746m Mimulus guttatus mgf021746m I 0.604
MLOC_56124 Hordeum vulgare MLOC_56124 I 0.656
MLOC_7772 Hordeum vulgare MLOC_7772 I 0.636
MTR_1g115315 Medicago truncatula MTR_1g115315 I 0.656
MTR_3g115620 Medicago truncatula MTR_3g115620 I 0.656
MTR_4g084550 Medicago truncatula MTR_4g084550 I 0.636
MTR_7g023810 Medicago truncatula MTR_7g023810 I 0.634
MTR_8g107210 Medicago truncatula MTR_8g107210 I 0.604
OB01G44030 Oryza brachyantha OB01G44030 I 0.656
OB05G19220 Oryza brachyantha OB05G19220 I 0.636
OBART01G35170 Oryza barthii OBART01G35170 I 0.656
OBART11G00060 Oryza barthii OBART11G00060 I 0.636
OGLUM11G00100 Oryza glumaepatula OGLUM11G00100 I 0.636
OGLUM12G00010 Oryza glumaepatula OGLUM12G00010 I 0.636
OLONG_016784 Oryza longistaminata OLONG_016784 I 0.656
OLONG_026278 Oryza longistaminata OLONG_026278 I 0.636
OMERI01G32310 Oryza meridionalis OMERI01G32310 I 0.656
OMERI11G00160 Oryza meridionalis OMERI11G00160 I 0.636
ONIVA01G40180 Oryza nivara ONIVA01G40180 I 0.656
ONIVA11G00010 Oryza nivara ONIVA11G00010 I 0.636
ONIVA12G00010 Oryza nivara ONIVA12G00010 I 0.636
OPUNC01G34140 Oryza punctata OPUNC01G34140 I 0.656
OPUNC11G00180 Oryza punctata OPUNC11G00180 I 0.636
OPUNC12G00190 Oryza punctata OPUNC12G00190 I 0.636
orange1.1g022516m.g Citrus sinensis orange1.1g022516m.g I 0.656
orange1.1g026809m.g Citrus sinensis orange1.1g026809m.g I 0.659
orange1.1g035594m.g Citrus sinensis orange1.1g035594m.g I 0.604
orange1.1g039144m.g Citrus sinensis orange1.1g039144m.g I 0.604
orange1.1g043602m.g Citrus sinensis orange1.1g043602m.g I 0.604
ORGLA01G0290300 Oryza glaberrima ORGLA01G0290300 I 0.656
ORGLA11G0000600 Oryza glaberrima ORGLA11G0000600 I 0.636
ORUFI01G38500 Oryza rufipogon ORUFI01G38500 I 0.656
ORUFI04G30250 Oryza rufipogon ORUFI04G30250 I 0.636
OS11G0102100 Oryza sativa OS11G0102100 I 0.636
OS12G0101600 Oryza sativa OS12G0101600 I 0.636
Pavir.Ea03245 Panicum virgatum Pavir.Ea03245 I 0.656
Pavir.Eb03552 Panicum virgatum Pavir.Eb03552 I 0.656
Pavir.J24082 Panicum virgatum Pavir.J24082 I 0.636
Pavir.J34412 Panicum virgatum Pavir.J34412 I 0.636
PDK_20s1408301g001 Phoenix dactylifera PDK_20s1408301g001 I 0.651
PGSC0003DMG400001565 Solanum tuberosum PGSC0003DMG400001565 I 0.656
PGSC0003DMG400005670 Solanum tuberosum PGSC0003DMG400005670 I 0.604
PGSC0003DMG400025358 Solanum tuberosum PGSC0003DMG400025358 I 0.616
PK07880.1 Cannabis sativa PK07880.1 I 0.656
PK07906.1 Cannabis sativa PK07906.1 I 0.604
PK14252.1 Cannabis sativa PK14252.1 I 0.656
Pm022951 Prunus mume Pm022951 I 0.656
Pm025084 Prunus mume Pm025084 I 0.604
Pm026793 Prunus mume Pm026793 I 0.656
POPTR_0002s00980 Populus trichocarpa POPTR_0002s00980 I 0.656
POPTR_0005s27410 Populus trichocarpa POPTR_0005s27410 I 0.656
POPTR_0012s04510 Populus trichocarpa POPTR_0012s04510 I 0.604
POPTR_0015s04520 Populus trichocarpa POPTR_0015s04520 I 0.604
PRUPE_ppa011225mg Prunus persica PRUPE_ppa011225mg I 0.656
PRUPE_ppa017419mg Prunus persica PRUPE_ppa017419mg I 0.604
PRUPE_ppa021400mg Prunus persica PRUPE_ppa021400mg I 0.656
SapurV1A.0016s0590 Salix purpurea SapurV1A.0016s0590 I 0.656
SapurV1A.0266s0300 Salix purpurea SapurV1A.0266s0300 I 0.656
SapurV1A.0351s0200 Salix purpurea SapurV1A.0351s0200 I 0.604
SapurV1A.0357s0040 Salix purpurea SapurV1A.0357s0040 I 0.604
SapurV1A.0406s0010 Salix purpurea SapurV1A.0406s0010 I 0.604
SapurV1A.0718s0010 Salix purpurea SapurV1A.0718s0010 I 0.604
SapurV1A.1240s0080 Salix purpurea SapurV1A.1240s0080 I 0.656
SapurV1A.2168s0010 Salix purpurea SapurV1A.2168s0010 I 0.604
Sb03g038080 Sorghum bicolor Sb03g038080 I 0.656
Sb05g003490 Sorghum bicolor Sb05g003490 I 0.636
SELMODRAFT_115439 Selaginella moellendorffii SELMODRAFT_115439 I 0.600
SELMODRAFT_123325 Selaginella moellendorffii SELMODRAFT_123325 I 0.600
SELMODRAFT_404178 Selaginella moellendorffii SELMODRAFT_404178 I 0.656
SELMODRAFT_407157 Selaginella moellendorffii SELMODRAFT_407157 I 0.656
SELMODRAFT_417553 Selaginella moellendorffii SELMODRAFT_417553 I 0.659
SELMODRAFT_419270 Selaginella moellendorffii SELMODRAFT_419270 I 0.661
SELMODRAFT_438787 Selaginella moellendorffii SELMODRAFT_438787 I 0.633
SELMODRAFT_451015 Selaginella moellendorffii SELMODRAFT_451015 I 0.607
SELMODRAFT_451353 Selaginella moellendorffii SELMODRAFT_451353 I 0.842
SELMODRAFT_451355 Selaginella moellendorffii SELMODRAFT_451355 I 0.633
Si002508m.g Setaria italica Si002508m.g I 0.656
Si012474m.g Setaria italica Si012474m.g I 0.636
Si027421m.g Setaria italica Si027421m.g I 0.636
Solyc02g082670.2 Solanum lycopersicum Solyc02g082670.2 I 0.656
Solyc03g118770.2 Solanum lycopersicum Solyc03g118770.2 I 0.604
Solyc11g072770.1 Solanum lycopersicum Solyc11g072770.1 I 0.616
TCM_000062 Theobroma cacao TCM_000062 I 0.656
TCM_010888 Theobroma cacao TCM_010888 I 0.604
TCM_012755 Theobroma cacao TCM_012755 I 0.604
TCM_034409 Theobroma cacao TCM_034409 I 0.664
Thhalv10008824m.g Eutrema salsugineum Thhalv10008824m.g I 0.664
Thhalv10009917m.g Eutrema salsugineum Thhalv10009917m.g I 0.656
Thhalv10022042m.g Eutrema salsugineum Thhalv10022042m.g I 0.604
Thhalv10025989m.g Eutrema salsugineum Thhalv10025989m.g I 0.658
TRAES3BF057600060CFD_g Triticum aestivum TRAES3BF057600060CFD_g I 0.656
TRAES3BF091200090CFD_g Triticum aestivum TRAES3BF091200090CFD_g I 0.656
TRAES3BF091200100CFD_g Triticum aestivum TRAES3BF091200100CFD_g I 0.656
Traes_3AL_D0053C177 Triticum aestivum Traes_3AL_D0053C177 I 0.656
Traes_3AS_9079D6B71 Triticum aestivum Traes_3AS_9079D6B71 I 0.634
Traes_3DL_6B1815F7D Triticum aestivum Traes_3DL_6B1815F7D I 0.656
Traes_3DS_97BBFFA03 Triticum aestivum Traes_3DS_97BBFFA03 I 0.656
Traes_5BL_2E6FA4A97 Triticum aestivum Traes_5BL_2E6FA4A97 I 0.636
Traes_5DL_193218298 Triticum aestivum Traes_5DL_193218298 I 0.636
TRIUR3_16981 Triticum urartu TRIUR3_16981 I 0.620
TRIUR3_23636 Triticum urartu TRIUR3_23636 I 0.656
VIT_04s0044g00150 Vitis vinifera VIT_04s0044g00150 I 0.656
VIT_04s0044g00160 Vitis vinifera VIT_04s0044g00160 I 0.599
VIT_17s0000g02460 Vitis vinifera VIT_17s0000g02460 I 0.604
VIT_18s0122g01140 Vitis vinifera VIT_18s0122g01140 I 0.656
WOX1 Populus trichocarpa POPTR_0010s12150 I 0.605
WOX1 Arabidopsis thaliana AT3G18010 I 0.604
WOX1 Vitis vinifera VIT_01s0011g05020 I 0.604
WOX10 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001761 I 0.664
WOX10 Arabidopsis thaliana AT1G20710 I 0.664
WOX13 Arabidopsis thaliana AT4G35550 D 0.656
WOX14 Arabidopsis thaliana AT1G20700 I 0.664
WOX14 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001881 I 0.664
WOX3 Oryza indica BGIOSGA036831 I 0.636
WOX8 Oryza sativa OS01G0818400 I 0.656