CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Si000488m.g
(
Setaria italica
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
Si000488m.g
T223168_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HDG9
M10628_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HDG9_01
0.601
0.526
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Si000488m
Homeodomain
71
127
KRSLHRLTSQQLEILEGFFSVCAHPDENQRRQLAIATGLALHQVKFWFQNKRTQVKH
Links
Other
Homeodomain
family TFs
Other
Setaria italica
TFs
45 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Sb03g036820
Sorghum bicolor
Sb03g036820
I
0.839
Pavir.Ea03124
Panicum virgatum
Pavir.Ea03124
N
0.748
GRMZM2G386276
Zea mays
GRMZM2G386276
N
0.721
evm.TU.supercontig_178.19
Carica papaya
evm.TU.supercontig_178.19
I
0.639
HDG8
Arabidopsis thaliana
AT3G03260
I
0.633
Thhalv10021974m.g
Eutrema salsugineum
Thhalv10021974m.g
I
0.633
OB01G42420
Oryza brachyantha
OB01G42420
N
0.630
Bo5g150100
Brassica oleracea
Bo5g150100
I
0.629
Bra032003
Brassica rapa
Bra032003
I
0.629
Bo2g018400
Brassica oleracea
Bo2g018400
I
0.629
Bra020066
Brassica rapa
Bra020066
I
0.629
Carubv10002574m.g
Capsella rubella
Carubv10002574m.g
I
0.628
Cagra.4849s0002
Capsella grandiflora
Cagra.4849s0002
I
0.628
Bo1g154790
Brassica oleracea
Bo1g154790
I
0.627
SELMODRAFT_450555
Selaginella moellendorffii
SELMODRAFT_450555
I
0.625
GLYMA08G21890
Glycine max
GLYMA08G21890
I
0.625
SELMODRAFT_450557
Selaginella moellendorffii
SELMODRAFT_450557
I
0.625
GLYMA07G02220
Glycine max
GLYMA07G02220
I
0.625
Cagra.2098s0060
Capsella grandiflora
Cagra.2098s0060
I
0.624
Carubv10015764m.g
Capsella rubella
Carubv10015764m.g
I
0.624
Bo6g069620
Brassica oleracea
Bo6g069620
I
0.616
Bra003213
Brassica rapa
Bra003213
I
0.616
OPUNC01G32670
Oryza punctata
OPUNC01G32670
N
0.613
Bostr.7867s0363
Boechera stricta
Bostr.7867s0363
I
0.612
Pavir.Eb03442
Panicum virgatum
Pavir.Eb03442
N
0.611
TCM_025205
Theobroma cacao
TCM_025205
I
0.609
AMTR_s00004p00265170
Amborella trichopoda
AMTR_s00004p00265170
I
0.609
OMERI01G30450
Oryza meridionalis
OMERI01G30450
N
0.609
ONIVA01G38360
Oryza nivara
ONIVA01G38360
N
0.609
OGLUM01G37810
Oryza glumaepatula
OGLUM01G37810
N
0.609
OBART01G33600
Oryza barthii
OBART01G33600
N
0.609
BGIOSGA004593
Oryza indica
BGIOSGA004593
N
0.609
ORUFI01G36780
Oryza rufipogon
ORUFI01G36780
N
0.609
ORGLA01G0275300
Oryza glaberrima
ORGLA01G0275300
N
0.609
evm.TU.supercontig_178.20
Carica papaya
evm.TU.supercontig_178.20
I
0.608
Solyc11g011940.1
Solanum lycopersicum
Solyc11g011940.1
I
0.604
Cagra.3356s0062
Capsella grandiflora
Cagra.3356s0062
I
0.604
SapurV1A.0231s0010
Salix purpurea
SapurV1A.0231s0010
I
0.603
Cucsa.108510
Cucumis sativus
Cucsa.108510
I
0.603
Cla013352
Citrullus lanatus
Cla013352
I
0.603
HDG9
Arabidopsis thaliana
AT5G17320
D
0.601
cassava38731.m1
Manihot esculenta
cassava38731.m1
I
0.601
Bostr.19046s0037
Boechera stricta
Bostr.19046s0037
I
0.601
TCM_017892
Theobroma cacao
TCM_017892
I
0.601
Thhalv10015677m.g
Eutrema salsugineum
Thhalv10015677m.g
I
0.599