Si004249m.g (Setaria italica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Si004249m.g T223174_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
WOX11
M06916_2.00
Arabidopsis thaliana
ADTTAATTAVD

HBTAATTAAHT
Dap-seq
OMalley et al.(2016)
WOX11_col_a
0.721 0.667
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si004249m Homeodomain 70 131

Links

Other Homeodomain family TFs
Other Setaria italica TFs

217 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.Eb02702 Panicum virgatum Pavir.Eb02702 I 0.862
GRMZM2G031882 Zea mays GRMZM2G031882 I 0.862
GRMZM2G133972 Zea mays GRMZM2G133972 I 0.862
OMERI01G23480 Oryza meridionalis OMERI01G23480 I 0.850
Cla009819 Citrullus lanatus Cla009819 I 0.850
Cucsa.046640 Cucumis sativus Cucsa.046640 I 0.850
ORGLA01G0211300 Oryza glaberrima ORGLA01G0211300 I 0.850
GSMUA_Achr8G27170_001 Musa acuminata GSMUA_Achr8G27170_001 I 0.850
GSMUA_Achr9G06660_001 Musa acuminata GSMUA_Achr9G06660_001 I 0.850
LPERR01G22080 Leersia perrieri LPERR01G22080 I 0.850
OBART01G25820 Oryza barthii OBART01G25820 I 0.850
OS01G0667450 Oryza sativa OS01G0667450 I 0.850
OB01G35000 Oryza brachyantha OB01G35000 I 0.850
BGIOSGA001059 Oryza indica BGIOSGA001059 I 0.850
OGLUM01G29670 Oryza glumaepatula OGLUM01G29670 I 0.850
ONIVA01G29060 Oryza nivara ONIVA01G29060 I 0.850
ONIVA05G27800 Oryza nivara ONIVA05G27800 I 0.834
OGLUM05G27500 Oryza glumaepatula OGLUM05G27500 I 0.834
OPUNC05G23480 Oryza punctata OPUNC05G23480 I 0.834
ORGLA05G0223800 Oryza glaberrima ORGLA05G0223800 I 0.834
BGIOSGA020366 Oryza indica BGIOSGA020366 I 0.834
OS05G0564500 Oryza sativa OS05G0564500 I 0.834
OBART05G25900 Oryza barthii OBART05G25900 I 0.834
ORUFI05G27780 Oryza rufipogon ORUFI05G27780 I 0.834
MLOC_7925 Hordeum vulgare MLOC_7925 I 0.833
TRAES3BF022100010CFD_g Triticum aestivum TRAES3BF022100010CFD_g I 0.833
Cagra.1195s0012 Capsella grandiflora Cagra.1195s0012 I 0.828
GLYMA13G24150 Glycine max GLYMA13G24150 I 0.828
VIT_10s0003g00560 Vitis vinifera VIT_10s0003g00560 I 0.828
Carubv10025224m.g Capsella rubella Carubv10025224m.g I 0.828
MTR_2g015000 Medicago truncatula MTR_2g015000 I 0.828
cassava4506.m1 Manihot esculenta cassava4506.m1 I 0.828
cassava40675.m1 Manihot esculenta cassava40675.m1 I 0.828
Pm010370 Prunus mume Pm010370 I 0.828
29900.m001555 Ricinus communis 29900.m001555 I 0.828
MTR_7g025010 Medicago truncatula MTR_7g025010 I 0.828
Thhalv10016784m.g Eutrema salsugineum Thhalv10016784m.g I 0.828
Aquca_036_00007 Aquilegia coerulea Aquca_036_00007 I 0.828
Ca_00357 Cicer arietinum Ca_00357 I 0.828
Ca_06365 Cicer arietinum Ca_06365 I 0.828
Bostr.23794s0703 Boechera stricta Bostr.23794s0703 I 0.828
GLYMA13G21860 Glycine max GLYMA13G21860 I 0.828
Gorai.011G031300 Gossypium raimondii Gorai.011G031300 I 0.828
TCM_029776 Theobroma cacao TCM_029776 I 0.828
PRUPE_ppa019841mg Prunus persica PRUPE_ppa019841mg I 0.828
GLYMA10G08030 Glycine max GLYMA10G08030 I 0.828
Gorai.009G165700 Gossypium raimondii Gorai.009G165700 I 0.828
Bra005464 Brassica rapa Bra005464 I 0.828
WOX9 Arabidopsis thaliana AT2G33880 I 0.828
Bo4g041330 Brassica oleracea Bo4g041330 I 0.828
Bo3g027500 Brassica oleracea Bo3g027500 I 0.828
MDP0000729328 Malus domestica MDP0000729328 I 0.828
orange1.1g036145m.g Citrus sinensis orange1.1g036145m.g I 0.828
SapurV1A.0270s0270 Salix purpurea SapurV1A.0270s0270 I 0.828
AMTR_s00021p00189010 Amborella trichopoda AMTR_s00021p00189010 I 0.828
MDP0000232004 Malus domestica MDP0000232004 I 0.828
Lus10005282.g Linum usitatissimum Lus10005282.g I 0.828
Solyc02g077390.1 Solanum lycopersicum Solyc02g077390.1 I 0.828
POPTR_0004s05090 Populus trichocarpa POPTR_0004s05090 I 0.828
POPTR_0011s05980 Populus trichocarpa POPTR_0011s05980 I 0.828
Ciclev10015562m.g Citrus clementina Ciclev10015562m.g I 0.828
PGSC0003DMG400010725 Solanum tuberosum PGSC0003DMG400010725 I 0.828
SapurV1A.0012s0880 Salix purpurea SapurV1A.0012s0880 I 0.828
WOX9 Arabidopsis lyrata Al_scaffold_0004_1872 I 0.828
GLYMA07G32430 Glycine max GLYMA07G32430 I 0.828
Bra022960 Brassica rapa Bra022960 I 0.828
gene29786-v1.0-hybrid Fragaria vesca gene29786-v1.0-hybrid I 0.828
CM1489.70.nc Lotus japonicus CM1489.70.nc I 0.828
evm.TU.supercontig_7.12 Carica papaya evm.TU.supercontig_7.12 I 0.828
Eucgr.D00577 Eucalyptus grandis Eucgr.D00577 I 0.827
mgf001579m Mimulus guttatus mgf001579m I 0.826
F775_23099 Aegilops tauschii F775_23099 I 0.812
WOX8 Arabidopsis thaliana AT5G45980 I 0.808
WOX8 Arabidopsis lyrata scaffold_800245.1 I 0.803
Carubv10027735m.g Capsella rubella Carubv10027735m.g I 0.803
Bo2g127670 Brassica oleracea Bo2g127670 I 0.803
Bostr.8819s0128 Boechera stricta Bostr.8819s0128 I 0.803
Cagra.2097s0014 Capsella grandiflora Cagra.2097s0014 I 0.803
Bra022008 Brassica rapa Bra022008 I 0.803
gene28935-v1.0-hybrid Fragaria vesca gene28935-v1.0-hybrid I 0.796
Thhalv10001099m.g Eutrema salsugineum Thhalv10001099m.g I 0.783
Si025013m.g Setaria italica Si025013m.g I 0.777
GRMZM2G409881 Zea mays GRMZM2G409881 I 0.777
Sb09g028562 Sorghum bicolor Sb09g028562 I 0.777
Pavir.Ca00938 Panicum virgatum Pavir.Ca00938 I 0.777
LPERR07G23520 Leersia perrieri LPERR07G23520 I 0.754
OB08G17020 Oryza brachyantha OB08G17020 I 0.744
cassava4770.m1 Manihot esculenta cassava4770.m1 I 0.743
Solyc06g072890.1 Solanum lycopersicum Solyc06g072890.1 I 0.735
PGSC0003DMG400027030 Solanum tuberosum PGSC0003DMG400027030 I 0.735
mgf017527m Mimulus guttatus mgf017527m I 0.727
PDK_20s1465351g003 Phoenix dactylifera PDK_20s1465351g003 I 0.723
Traes_2BS_8A1FE01EE Triticum aestivum Traes_2BS_8A1FE01EE I 0.722
Eucgr.A02149 Eucalyptus grandis Eucgr.A02149 I 0.722
Gorai.007G346300 Gossypium raimondii Gorai.007G346300 I 0.722
evm.TU.supercontig_73.3 Carica papaya evm.TU.supercontig_73.3 I 0.722
Gorai.013G196400 Gossypium raimondii Gorai.013G196400 I 0.722
gene30337-v1.0-hybrid Fragaria vesca gene30337-v1.0-hybrid I 0.722
Traes_2DS_B5227B5F6 Triticum aestivum Traes_2DS_B5227B5F6 I 0.722
MDP0000136426 Malus domestica MDP0000136426 I 0.722
Pavir.Ba00249 Panicum virgatum Pavir.Ba00249 I 0.722
Pavir.Fb01029 Panicum virgatum Pavir.Fb01029 I 0.722
Si030836m.g Setaria italica Si030836m.g I 0.722
orange1.1g047211m.g Citrus sinensis orange1.1g047211m.g I 0.722
MDP0000524885 Malus domestica MDP0000524885 I 0.722
Ciclev10021682m.g Citrus clementina Ciclev10021682m.g I 0.722
Si039112m.g Setaria italica Si039112m.g I 0.722
TCM_025805 Theobroma cacao TCM_025805 I 0.722
TRAES3BF079200050CFD_g Triticum aestivum TRAES3BF079200050CFD_g I 0.722
mgf016673m Mimulus guttatus mgf016673m I 0.722
Aquca_014_00949 Aquilegia coerulea Aquca_014_00949 I 0.722
Bostr.19046s0084 Boechera stricta Bostr.19046s0084 I 0.722
Cucsa.336980 Cucumis sativus Cucsa.336980 I 0.722
Ca_08180 Cicer arietinum Ca_08180 I 0.722
30072.m000927 Ricinus communis 30072.m000927 I 0.722
cassava15562.m1 Manihot esculenta cassava15562.m1 I 0.722
Ca_19701 Cicer arietinum Ca_19701 I 0.722
Cagra.2098s0022 Capsella grandiflora Cagra.2098s0022 I 0.722
VIT_08s0056g01200 Vitis vinifera VIT_08s0056g01200 I 0.722
Traes_4AS_EC04D9E8A Triticum aestivum Traes_4AS_EC04D9E8A I 0.722
Carubv10003719m.g Capsella rubella Carubv10003719m.g I 0.722
Pavir.J23422 Panicum virgatum Pavir.J23422 I 0.722
Traes_4DL_5E79CC79C Triticum aestivum Traes_4DL_5E79CC79C I 0.722
Cagra.6254s0027 Capsella grandiflora Cagra.6254s0027 I 0.722
TRIUR3_34876 Triticum urartu TRIUR3_34876 I 0.722
Pavir.J33010 Panicum virgatum Pavir.J33010 I 0.722
Carubv10016081m.g Capsella rubella Carubv10016081m.g I 0.722
SapurV1A.0631s0110 Salix purpurea SapurV1A.0631s0110 I 0.722
F775_22811 Aegilops tauschii F775_22811 I 0.722
GLYMA03G01000 Glycine max GLYMA03G01000 I 0.722
GLYMA19G29660 Glycine max GLYMA19G29660 I 0.722
F775_11947 Aegilops tauschii F775_11947 I 0.722
BRADI3G18800 Brachypodium distachyon BRADI3G18800 I 0.722
Bra036446 Brassica rapa Bra036446 I 0.722
BRADI1G17420 Brachypodium distachyon BRADI1G17420 I 0.722
GRMZM2G162481 Zea mays GRMZM2G162481 I 0.722
GRMZM2G170958 Zea mays GRMZM2G170958 I 0.722
GSMUA_Achr6G15910_001 Musa acuminata GSMUA_Achr6G15910_001 I 0.722
GSMUA_Achr8G01590_001 Musa acuminata GSMUA_Achr8G01590_001 I 0.722
Si015065m.g Setaria italica Si015065m.g I 0.722
GSMUA_Achr5G27730_001 Musa acuminata GSMUA_Achr5G27730_001 I 0.722
Thhalv10022222m.g Eutrema salsugineum Thhalv10022222m.g I 0.722
GRMZM2G314064 Zea mays GRMZM2G314064 I 0.722
GSMUA_Achr10G12820_001 Musa acuminata GSMUA_Achr10G12820_001 I 0.722
Bra031980 Brassica rapa Bra031980 I 0.722
Bra023638 Brassica rapa Bra023638 I 0.722
BGIOSGA026413 Oryza indica BGIOSGA026413 I 0.722
WOX10 Oryza indica BGIOSGA027391 I 0.722
Bo11772s010 Brassica oleracea Bo11772s010 I 0.722
WOX6 Oryza indica BGIOSGA010824 I 0.722
WOX12 Arabidopsis thaliana AT5G17810 I 0.722
WOX12 Arabidopsis lyrata Al_scaffold_0006_1694 I 0.722
AMTR_s00119p00100440 Amborella trichopoda AMTR_s00119p00100440 I 0.722
Bo1g153650 Brassica oleracea Bo1g153650 I 0.722
Bo2g013980 Brassica oleracea Bo2g013980 I 0.722
Bra002108 Brassica rapa Bra002108 I 0.722
LjSGA_037808.1 Lotus japonicus LjSGA_037808.1 I 0.722
Bo9g159820 Brassica oleracea Bo9g159820 I 0.722
LjT26C04.20.nd Lotus japonicus LjT26C04.20.nd I 0.722
Bo2g062660 Brassica oleracea Bo2g062660 I 0.722
Bo5g148780 Brassica oleracea Bo5g148780 I 0.722
LPERR03G13850 Leersia perrieri LPERR03G13850 I 0.722
GSMUA_Achr9G05010_001 Musa acuminata GSMUA_Achr9G05010_001 I 0.722
ORUFI03G16410 Oryza rufipogon ORUFI03G16410 I 0.722
ORUFI07G27650 Oryza rufipogon ORUFI07G27650 I 0.722
ORUFI08G08400 Oryza rufipogon ORUFI08G08400 I 0.722
ORGLA08G0063600 Oryza glaberrima ORGLA08G0063600 I 0.722
Pavir.Ia03448 Panicum virgatum Pavir.Ia03448 I 0.722
ORGLA03G0151500 Oryza glaberrima ORGLA03G0151500 I 0.722
ORGLA07G0211000 Oryza glaberrima ORGLA07G0211000 I 0.722
OS03G0325600 Oryza sativa OS03G0325600 I 0.722
WOX11 Oryza sativa OS07G0684900 I 0.722
Sb01g036670 Sorghum bicolor Sb01g036670 I 0.722
Sb02g043300 Sorghum bicolor Sb02g043300 I 0.722
Sb07g007600 Sorghum bicolor Sb07g007600 I 0.722
PRUPE_ppa026303mg Prunus persica PRUPE_ppa026303mg I 0.722
POPTR_0019s05730 Populus trichocarpa POPTR_0019s05730 I 0.722
WOX10 Oryza sativa OS08G0242400 I 0.722
POPTR_0013s06310 Populus trichocarpa POPTR_0013s06310 I 0.722
OPUNC07G25100 Oryza punctata OPUNC07G25100 I 0.722
OPUNC03G15320 Oryza punctata OPUNC03G15320 I 0.722
MTR_7g086940 Medicago truncatula MTR_7g086940 I 0.722
OBART03G15820 Oryza barthii OBART03G15820 I 0.722
OBART07G26670 Oryza barthii OBART07G26670 I 0.722
MTR_6g027390 Medicago truncatula MTR_6g027390 I 0.722
Thhalv10015651m.g Eutrema salsugineum Thhalv10015651m.g I 0.722
MLOC_65745 Hordeum vulgare MLOC_65745 I 0.722
MLOC_6669 Hordeum vulgare MLOC_6669 I 0.722
LPERR07G23470 Leersia perrieri LPERR07G23470 I 0.722
OGLUM03G15990 Oryza glumaepatula OGLUM03G15990 I 0.722
OMERI07G23310 Oryza meridionalis OMERI07G23310 I 0.722
ONIVA07G26430 Oryza nivara ONIVA07G26430 I 0.722
ONIVA08G08030 Oryza nivara ONIVA08G08030 I 0.722
OGLUM07G26700 Oryza glumaepatula OGLUM07G26700 I 0.722
SapurV1A.1660s0010 Salix purpurea SapurV1A.1660s0010 I 0.722
OGLUM08G08120 Oryza glumaepatula OGLUM08G08120 I 0.722
WOX11 Arabidopsis thaliana AT3G03660 D 0.721
WOX11 Arabidopsis lyrata fgenesh2_kg.3__312__AT3G03660.1 I 0.721
GSMUA_Achr10G05090_001 Musa acuminata GSMUA_Achr10G05090_001 I 0.718
OS07G0533201 Oryza sativa OS07G0533201 N 0.711
ORGLA07G0240100 Oryza glaberrima ORGLA07G0240100 N 0.711
OMERI07G13960 Oryza meridionalis OMERI07G13960 N 0.711
Pm025458 Prunus mume Pm025458 I 0.701
TRIUR3_34808 Triticum urartu TRIUR3_34808 I 0.701
MTR_4g088080 Medicago truncatula MTR_4g088080 I 0.697
MTR_4g088070 Medicago truncatula MTR_4g088070 I 0.694
GSMUA_Achr3G09460_001 Musa acuminata GSMUA_Achr3G09460_001 I 0.677
Bra017448 Brassica rapa Bra017448 I 0.654
Bo9g070070 Brassica oleracea Bo9g070070 I 0.654
Pavir.Ib01521 Panicum virgatum Pavir.Ib01521 I 0.653
PDK_20s13009443g001 Phoenix dactylifera PDK_20s13009443g001 I 0.649
OB10G14840 Oryza brachyantha OB10G14840 I 0.626
Bo8g106350 Brassica oleracea Bo8g106350 I 0.614
Thhalv10009654m.g Eutrema salsugineum Thhalv10009654m.g I 0.614
Bra026791 Brassica rapa Bra026791 I 0.614
SELMODRAFT_123325 Selaginella moellendorffii SELMODRAFT_123325 I 0.612
SELMODRAFT_115439 Selaginella moellendorffii SELMODRAFT_115439 I 0.612