Si004333m.g (Setaria italica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Si004333m.g T223175_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.646 0.754
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si004333m Homeodomain 55 111

Links

Other Homeodomain family TFs
Other Setaria italica TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OB01G35240 Oryza brachyantha OB01G35240 I 0.867
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.867
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.862
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.862
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.860
F775_01844 Aegilops tauschii F775_01844 I 0.860
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.860
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.835
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.835
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.835
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.835
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.835
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.835
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.835
OS01G0672201 Oryza sativa OS01G0672201 I 0.835
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.723
Si020949m.g Setaria italica Si020949m.g I 0.701
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.700
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.700
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.699
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.699
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.681
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.681
OBART05G25730 Oryza barthii OBART05G25730 I 0.681
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.681
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.681
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.681
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.681
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.677
Ca_11272 Cicer arietinum Ca_11272 I 0.676
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.674
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.666
TCM_008214 Theobroma cacao TCM_008214 I 0.666
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.653
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.653
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.653
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.653
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.653
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.652
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.649
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.649
Pm010098 Prunus mume Pm010098 I 0.649
Cla009803 Citrullus lanatus Cla009803 I 0.649
Ca_00337 Cicer arietinum Ca_00337 I 0.649
Ca_06343 Cicer arietinum Ca_06343 I 0.649
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.649
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.649
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.649
MDP0000192108 Malus domestica MDP0000192108 I 0.649
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.649
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.649
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.649
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.649
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.648
mgf006858m Mimulus guttatus mgf006858m I 0.648
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.647
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.647
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.647
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.647
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.647
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.647
PK13272.1 Cannabis sativa PK13272.1 I 0.647
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.646
RLT1 Arabidopsis thaliana AT1G28420 D 0.646
Bra010869 Brassica rapa Bra010869 I 0.646
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.646
Bo3g143570 Brassica oleracea Bo3g143570 I 0.646
Bo5g055970 Brassica oleracea Bo5g055970 I 0.646
PK06068.1 Cannabis sativa PK06068.1 I 0.645
Bra032908 Brassica rapa Bra032908 I 0.645
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.644
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.644
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.643
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.643
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.643
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.642
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.642
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.638
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.637
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.637
MDP0000288192 Malus domestica MDP0000288192 I 0.637
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.637
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.637
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.637
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.637
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.637
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.637
29983.m003128 Ricinus communis 29983.m003128 I 0.637
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.637
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.636
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.633
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.633
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.633
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.633
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.633
TCM_029805 Theobroma cacao TCM_029805 I 0.633
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.633
mgf006635m Mimulus guttatus mgf006635m I 0.631
Bo7g067190 Brassica oleracea Bo7g067190 I 0.630
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.629
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.629
Bra033725 Brassica rapa Bra033725 I 0.629
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.627
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.627
RLT2 Arabidopsis thaliana AT5G44180 I 0.626
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.626
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.621
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.621
30190.m011307 Ricinus communis 30190.m011307 I 0.613
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.602
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.602