Si012474m.g (Setaria italica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Si012474m.g T223192_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
WUS
M06905_2.00
Arabidopsis thaliana
TRAWTGAWTGA

TCAWTCAWTYA
Dap-seq
OMalley et al.(2016)
WUS1_col_a
0.747 0.702
WUS
M06906_2.00
Arabidopsis thaliana
TGAWTGAWTGW

WCAWTCAWTCA
Dap-seq
OMalley et al.(2016)
WUS1_colamp_a
0.747 0.702
GRMZM2G038252
M02137_2.00
Zea mays
HTRATTGV

BCAATYAD
PBM
Weirauch et al.(2014)
pTH6141
0.618 0.456
WOX13
M02049_2.00
Arabidopsis thaliana
YTGATTGA

TCAATCAR
PBM
Weirauch et al.(2014)
pTH6461
0.618 0.439
WOX13
M00866_2.00
Arabidopsis thaliana
NNTGATTGAN

NTCAATCANN
PBM
Franco-Zorrilla et al.(2014)
WOX13
0.618 0.439
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si012474m Homeodomain 5 66

Links

Other Homeodomain family TFs
Other Setaria italica TFs

578 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_31854 Aegilops tauschii F775_31854 N 0.000
F775_19529 Aegilops tauschii F775_19529 N 0.000
BRADI2G60970 Brachypodium distachyon BRADI2G60970 N 0.000
BRADI2G61050 Brachypodium distachyon BRADI2G61050 N 0.000
BRADI3G43250 Brachypodium distachyon BRADI3G43250 N 0.000
MLOC_72280 Hordeum vulgare MLOC_72280 N 0.000
MLOC_67053 Hordeum vulgare MLOC_67053 N 0.000
MLOC_36351 Hordeum vulgare MLOC_36351 N 0.000
LPERR01G38470 Leersia perrieri LPERR01G38470 N 0.000
OBART01G44150 Oryza barthii OBART01G44150 N 0.000
ORGLA01G0380200 Oryza glaberrima ORGLA01G0380200 N 0.000
OGLUM01G48440 Oryza glumaepatula OGLUM01G48440 N 0.000
BGIOSGA005178 Oryza indica BGIOSGA005178 N 0.000
BGIOSGA000097 Oryza indica BGIOSGA000097 N 0.000
OLONG_006457 Oryza longistaminata OLONG_006457 N 0.000
OMERI01G40940 Oryza meridionalis OMERI01G40940 N 0.000
ONIVA01G50120 Oryza nivara ONIVA01G50120 N 0.000
OPUNC01G43070 Oryza punctata OPUNC01G43070 N 0.000
ORUFI01G47560 Oryza rufipogon ORUFI01G47560 N 0.000
OS01G0952800 Oryza sativa OS01G0952800 N 0.000
Pavir.Ea04053 Panicum virgatum Pavir.Ea04053 N 0.000
Pavir.J04771 Panicum virgatum Pavir.J04771 N 0.000
Si002720m.g Setaria italica Si002720m.g N 0.000
Sb03g046090 Sorghum bicolor Sb03g046090 N 0.000
TRAES3BF136000020CFD_g Triticum aestivum TRAES3BF136000020CFD_g N 0.000
Traes_3AL_95403ABBA Triticum aestivum Traes_3AL_95403ABBA N 0.000
Traes_2DL_865346DA2 Triticum aestivum Traes_2DL_865346DA2 N 0.000
Traes_2BL_00608F8D6 Triticum aestivum Traes_2BL_00608F8D6 N 0.000
Traes_2AL_ACBAA6A31 Triticum aestivum Traes_2AL_ACBAA6A31 N 0.000
TRIUR3_18175 Triticum urartu TRIUR3_18175 N 0.000
TRIUR3_22165 Triticum urartu TRIUR3_22165 N 0.000
GRMZM2G057413 Zea mays GRMZM2G057413 N 0.000
AC193786.3_FG005 Zea mays AC193786.3_FG005 N 0.000