CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Si024219m.g
(
Setaria italica
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
Si024219m.g
T223219_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WUS
M06905_2.00
Arabidopsis thaliana
TRAWTGAWTGA
TCAWTCAWTYA
Dap-seq
OMalley et al.(2016)
WUS1_col_a
0.763
0.807
WUS
M06906_2.00
Arabidopsis thaliana
TGAWTGAWTGW
WCAWTCAWTCA
Dap-seq
OMalley et al.(2016)
WUS1_colamp_a
0.763
0.807
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Si024219m
Homeodomain
31
93
SGSRWTPTPEQIRILKELYYGCGIRSPNSEQIQRITAMLRQHGKIEGKNVFYWFQNHKARERQ
Links
Other
Homeodomain
family TFs
Other
Setaria italica
TFs
470 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy