Si030983m.g (Setaria italica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Si030983m.g T223230_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.691 0.632
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.691 0.632
ATHB-12
M00865_2.00
Arabidopsis thaliana
NNNNNNNN

NNNNNNNN
PBM
Franco-Zorrilla et al.(2014)
ATHB12
0.679 0.772
ATHB-12
M02045_2.00
Arabidopsis thaliana
BHWWWWWWDV

BHWWWWWWDV
PBM
Weirauch et al.(2014)
pTH7207
0.679 0.772
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN

NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.673 0.544
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD

HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.673 0.544
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA

TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.673 0.544
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD

HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.671 0.596
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD

HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.671 0.596
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN

NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
0.671 0.526
Q39944_HELAN
M10802_2.00
Helianthus annuus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HAHB4_01
0.654 0.632
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si030983m Homeodomain 29 85

Links

Other Homeodomain family TFs
Other Setaria italica TFs

258 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00040p00057740 Amborella trichopoda AMTR_s00040p00057740 I 0.000
Al_scaffold_0007_1421 Arabidopsis lyrata Al_scaffold_0007_1421 N 0.000
scaffold_105455.1 Arabidopsis lyrata scaffold_105455.1 N 0.000
fgenesh2_kg.8__404__AT5G44080.1 Arabidopsis lyrata fgenesh2_kg.8__404__AT5G44080.1 N 0.000
fgenesh2_kg.1__328__AT1G03970.1 Arabidopsis lyrata fgenesh2_kg.1__328__AT1G03970.1 N 0.000
GBF4 Arabidopsis thaliana AT1G03970 N 0.000
AT5G44080 Arabidopsis thaliana AT5G44080 N 0.000
Bostr.26675s0358 Boechera stricta Bostr.26675s0358 N 0.000
Bostr.3148s0051 Boechera stricta Bostr.3148s0051 N 0.000
Bo5g004230 Brassica oleracea Bo5g004230 N 0.000
Bo7g067030 Brassica oleracea Bo7g067030 N 0.000
Bra015281 Brassica rapa Bra015281 N 0.000
PK16522.1 Cannabis sativa PK16522.1 N 0.000
Cagra.12696s0002 Capsella grandiflora Cagra.12696s0002 N 0.000
Cagra.1671s0014 Capsella grandiflora Cagra.1671s0014 N 0.000
Carubv10011573m.g Capsella rubella Carubv10011573m.g N 0.000
Carubv10027647m.g Capsella rubella Carubv10027647m.g N 0.000
evm.TU.supercontig_21.207 Carica papaya evm.TU.supercontig_21.207 N 0.000
Ca_04375 Cicer arietinum Ca_04375 N 0.000
Cla014026 Citrullus lanatus Cla014026 N 0.000
Ciclev10002059m.g Citrus clementina Ciclev10002059m.g I 0.000
orange1.1g025985m.g Citrus sinensis orange1.1g025985m.g I 0.000
Cucsa.363740 Cucumis sativus Cucsa.363740 I 0.000
Thhalv10009710m.g Eutrema salsugineum Thhalv10009710m.g N 0.000
Thhalv10003246m.g Eutrema salsugineum Thhalv10003246m.g N 0.000
gene08154-v1.0-hybrid Fragaria vesca gene08154-v1.0-hybrid N 0.000
GLYMA10G36820 Glycine max GLYMA10G36820 N 0.000
Gorai.005G078500 Gossypium raimondii Gorai.005G078500 N 0.000
LPERR05G14180 Leersia perrieri LPERR05G14180 I 0.000
Lus10028575.g Linum usitatissimum Lus10028575.g N 0.000
chr5.CM0052.120.nc Lotus japonicus chr5.CM0052.120.nc N 0.000
MDP0000208334 Malus domestica MDP0000208334 N 0.000
cassava12750.valid.m1 Manihot esculenta cassava12750.valid.m1 I 0.000
MTR_4g094390 Medicago truncatula MTR_4g094390 I 0.000
MTR_1g098590 Medicago truncatula MTR_1g098590 N 0.000
mgf015540m Mimulus guttatus mgf015540m I 0.000
mgf008848m Mimulus guttatus mgf008848m N 0.000
GSMUA_Achr3G22470_001 Musa acuminata GSMUA_Achr3G22470_001 I 0.000
OBART05G17920 Oryza barthii OBART05G17920 I 0.000
OB05G25740 Oryza brachyantha OB05G25740 I 0.000
ORGLA05G0154900 Oryza glaberrima ORGLA05G0154900 I 0.000
OGLUM05G18920 Oryza glumaepatula OGLUM05G18920 I 0.000
BGIOSGA019930 Oryza indica BGIOSGA019930 I 0.000
OMERI05G15500 Oryza meridionalis OMERI05G15500 I 0.000
ONIVA05G18780 Oryza nivara ONIVA05G18780 I 0.000
OPUNC05G15820 Oryza punctata OPUNC05G15820 I 0.000
ORUFI05G19090 Oryza rufipogon ORUFI05G19090 I 0.000
OS05G0437700 Oryza sativa OS05G0437700 I 0.000
LOC_Os05g36160 Oryza sativa LOC_Os05g36160 D 0.000
POPTR_0002s06800 Populus trichocarpa POPTR_0002s06800 I 0.000
POPTR_0005s21500 Populus trichocarpa POPTR_0005s21500 I 0.000
Pm022545 Prunus mume Pm022545 I 0.000
29863.m001047 Ricinus communis 29863.m001047 N 0.000
SapurV1A.0134s0060 Salix purpurea SapurV1A.0134s0060 I 0.000
SapurV1A.0625s0150 Salix purpurea SapurV1A.0625s0150 I 0.000
Solyc04g071510.2 Solanum lycopersicum Solyc04g071510.2 I 0.000
TCM_035623 Theobroma cacao TCM_035623 N 0.000
VIT_18s0072g00470 Vitis vinifera VIT_18s0072g00470 N 0.000