CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SMAR003378
(
Strigamia maritima
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
SMAR003378
T223368_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q4RRY4_TETNG
M02169_2.00
Tetraodon nigroviridis
NNYAATYAN
NTRATTRNN
PBM
Weirauch et al.(2014)
pTH6326
0.686
0.421
A1JVI6_MOUSE
M02033_2.00
Mus musculus
HTGATTGN
NCAATCAD
PBM
Weirauch et al.(2014)
pTH5986
0.674
0.439
Lhx8
M00534_2.00
Mus musculus
NNTRATKRN
NYMATYANN
PBM
Berger et al.(2008)
Lhx8_2247
0.653
0.421
Lhx8
M03288_2.00
Mus musculus
BYRATYRVNNBTRATYRN
NYRATYAVNNBYRATYRV
SELEX
Jolma et al.(2013)
Lhx8_1
0.653
0.421
Lhx8
M03289_2.00
Mus musculus
BYRATYRV
BYRATYRV
SELEX
Jolma et al.(2013)
Lhx8_2
0.653
0.421
Lhx8
M03290_2.00
Mus musculus
TRATTGCAATYA
TRATTGCAATYA
SELEX
Jolma et al.(2013)
Lhx8_3
0.653
0.421
LHX8
M05210_2.00
Homo sapiens
STAATTAN
NTAATTAS
SELEX
Yin et al.(2017)
LHX8_FL_HT-SELEX_1
0.653
0.421
LHX8
M05211_2.00
Homo sapiens
TRATTGCAATYA
TRATTGCAATYA
SELEX
Yin et al.(2017)
LHX8_FL_HT-SELEX_2
0.653
0.421
LHX8
M10713_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX8_06
0.653
0.421
LHX8
M05212_2.00
Homo sapiens
STAATYAN
NTRATTAS
SELEX
Yin et al.(2017)
LHX8_FL_Methyl-HT-SELEX_1
0.653
0.421
LHX8
M05213_2.00
Homo sapiens
NTAACGAB
VTCGTTAN
SELEX
Yin et al.(2017)
LHX8_FL_Methyl-HT-SELEX_2
0.653
0.421
LHX8
M05214_2.00
Homo sapiens
TRATTGCAATYA
TRATTGCAATYA
SELEX
Yin et al.(2017)
LHX8_FL_Methyl-HT-SELEX_3
0.653
0.421
LHX6
M02086_2.00
Homo sapiens
NTRATTRN
NYAATYAN
PBM
Weirauch et al.(2014)
pTH6556
0.653
0.404
Lhx6
M00434_2.00
Mus musculus
NTRATTRN
NYAATYAN
PBM
Berger et al.(2008)
Lhx6_2272
0.653
0.404
Lhx6_CONSTRUCT
M00539_2.00
PBM CONSTRUCTS
NNTRATTRN
NYAATYANN
PBM
Berger et al.(2008)
Lhx6_3432
0.653
0.404
LHX6
M03108_2.00
Homo sapiens
VYTAATTAVB
VBTAATTARB
SELEX
Jolma et al.(2013)
LHX6_1
0.653
0.404
LHX6
M03109_2.00
Homo sapiens
YAATYARYRCTAATTA
TAATTAGYRYTRATTR
SELEX
Jolma et al.(2013)
LHX6_2
0.653
0.404
LHX6
M03110_2.00
Homo sapiens
TRATTGCAATYA
TRATTGCAATYA
SELEX
Jolma et al.(2013)
LHX6_3
0.653
0.404
LHX6
M04992_2.00
Homo sapiens
CTAATTRV
BYAATTAG
SELEX
Yin et al.(2017)
LHX6_FL_HT-SELEX_1
0.653
0.404
LHX6
M04993_2.00
Homo sapiens
TRATTGCAATYA
TRATTGCAATYA
SELEX
Yin et al.(2017)
LHX6_FL_HT-SELEX_2
0.653
0.404
LHX6
M05870_2.00
Homo sapiens
NYTRATTR
YAATYARN
SMiLE-seq
Isakova et al.(2017)
LHX6
0.653
0.404
Lhx6
M09187_2.00
Mus musculus
NYTGATTRV
BYAATCARN
Misc
Kulakovskiy et al.(2013)
LHX6_MOUSE.H11MO.0.C
0.653
0.404
LHX6
M04994_2.00
Homo sapiens
STAATTAV
BTAATTAS
SELEX
Yin et al.(2017)
LHX6_FL_Methyl-HT-SELEX_1
0.653
0.404
LHX6
M04995_2.00
Homo sapiens
HTAACGAG
CTCGTTAD
SELEX
Yin et al.(2017)
LHX6_FL_Methyl-HT-SELEX_2
0.653
0.404
LHX6
M04996_2.00
Homo sapiens
TRATTGCAATYA
TRATTGCAATYA
SELEX
Yin et al.(2017)
LHX6_FL_Methyl-HT-SELEX_3
0.653
0.404
ESX1
M00291_2.00
Homo sapiens
NNTRATNRN
NYNATYANN
PBM
Barrera et al.(2016)
ESX1_K193R
0.652
0.439
ZFHX2
M02089_2.00
Homo sapiens
NNTRATYANN
NNTRATYANN
PBM
Weirauch et al.(2014)
pTH5642
0.646
0.368
en
M03793_2.00
Drosophila melanogaster
NTAATTRN
NYAATTAN
SELEX
Nitta et al.(2015)
en_1
0.644
0.404
en
M06485_2.00
Drosophila melanogaster
YTAATTR
YAATTAR
B1H
Mathelier et al.(2014)
MA0220.1
0.644
0.404
en
M06236_2.00
Drosophila melanogaster
NYTAATTR
YAATTARN
B1H
Zhu et al.(2011)
En_Cell_FBgn0000577
0.644
0.404
en
M06237_2.00
Drosophila melanogaster
DBTAATKR
YMATTAVH
B1H
Zhu et al.(2011)
en_FlyReg_FBgn0000577
0.644
0.404
en
M06238_2.00
Drosophila melanogaster
NNNTAATTRN
NYAATTANNN
B1H
Zhu et al.(2011)
en_SOLEXA_2_FBgn0000577
0.644
0.404
en
M06239_2.00
Drosophila melanogaster
NTAATTR
YAATTAN
B1H
Zhu et al.(2011)
En_SOLEXA_FBgn0000577
0.644
0.404
en
M09677_2.00
Drosophila melanogaster
HTAATTRN
NYAATTAD
Misc
Kulakovskiy et al.(2009)
en
0.644
0.404
en
M10785_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$EN_Q6
0.644
0.404
ENSTNIG00000017092
M02109_2.00
Tetraodon nigroviridis
YYAATCAD
HTGATTRR
PBM
Weirauch et al.(2014)
pTH6064
0.638
0.368
En2
M00484_2.00
Mus musculus
NNYHATHN
NDATDRNN
PBM
Berger et al.(2008)
En2_0952
0.637
0.404
En1
M00519_2.00
Mus musculus
HNWTNNN
NNNAWND
PBM
Berger et al.(2008)
En1_3123
0.637
0.404
EN1
M03180_2.00
Homo sapiens
NNTAATTRVB
VBYAATTANN
SELEX
Jolma et al.(2013)
EN1_1
0.637
0.404
EN1
M03181_2.00
Homo sapiens
TAATTRSNYAATTA
TAATTRNSYAATTA
SELEX
Jolma et al.(2013)
EN1_2
0.637
0.404
EN1
M03182_2.00
Homo sapiens
BTAATTRN
NYAATTAV
SELEX
Jolma et al.(2013)
EN1_3
0.637
0.404
EN1
M03183_2.00
Homo sapiens
TDAKKRSNYMATTA
TAATKRNSYMMTHA
SELEX
Jolma et al.(2013)
EN1_4
0.637
0.404
EN2
M03189_2.00
Homo sapiens
NNTAATTRNN
NNYAATTANN
SELEX
Jolma et al.(2013)
EN2_1
0.637
0.404
EN2
M03190_2.00
Homo sapiens
VBTAATTRNN
NNYAATTAVB
SELEX
Jolma et al.(2013)
EN2_2
0.637
0.404
En2
M03276_2.00
Mus musculus
VBTAATTASN
NSTAATTAVB
SELEX
Jolma et al.(2013)
En2_1
0.637
0.404
EN1
M05218_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
EN1_eDBD_HT-SELEX
0.637
0.404
EN2
M05237_2.00
Homo sapiens
BTAATTRV
BYAATTAV
SELEX
Yin et al.(2017)
EN2_eDBD_HT-SELEX
0.637
0.404
EN1
M05871_2.00
Homo sapiens
VNYAATTA
TAATTRNB
SMiLE-seq
Isakova et al.(2017)
EN1
0.637
0.404
EN1
M10714_2.00
Homo sapiens
RTDDTBB
VVAHHAY
Transfac
Matys et al.(2006)
V$EN1_01
0.637
0.404
EN1
M05219_2.00
Homo sapiens
NTAAYGAB
VTCRTTAN
SELEX
Yin et al.(2017)
EN1_eDBD_Methyl-HT-SELEX_1
0.637
0.404
EN1
M05220_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
EN1_eDBD_Methyl-HT-SELEX_2
0.637
0.404
EN2
M05238_2.00
Homo sapiens
VHTDAYGHB
VDCRTHADB
SELEX
Yin et al.(2017)
EN2_eDBD_Methyl-HT-SELEX_1
0.637
0.404
EN2
M05239_2.00
Homo sapiens
BTAATTRV
BYAATTAV
SELEX
Yin et al.(2017)
EN2_eDBD_Methyl-HT-SELEX_2
0.637
0.404
Isx
M00452_2.00
Mus musculus
NNHDATNN
NNATHDNN
PBM
Berger et al.(2008)
Isx_3445
0.637
0.439
ISX
M00319_2.00
Homo sapiens
DTAATTRK
MYAATTAH
PBM
Barrera et al.(2016)
ISX_REF
0.635
0.404
ISX
M03218_2.00
Homo sapiens
NTAATTARATTAN
NTAATYTAATTAN
SELEX
Jolma et al.(2013)
ISX_1
0.635
0.404
ISX
M03219_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Jolma et al.(2013)
ISX_2
0.635
0.404
ISX
M03220_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
ISX_3
0.635
0.404
ISX
M05304_2.00
Homo sapiens
BTAATTRG
CYAATTAV
SELEX
Yin et al.(2017)
ISX_eDBD_HT-SELEX
0.635
0.404
ISX
M05307_2.00
Homo sapiens
YTAATTRS
SYAATTAR
SELEX
Yin et al.(2017)
ISX_FL_HT-SELEX
0.635
0.404
ISX
M05305_2.00
Homo sapiens
NTAATTAG
CTAATTAN
SELEX
Yin et al.(2017)
ISX_eDBD_Methyl-HT-SELEX_1
0.635
0.404
ISX
M05306_2.00
Homo sapiens
HTAAYGHN
NDCRTTAD
SELEX
Yin et al.(2017)
ISX_eDBD_Methyl-HT-SELEX_2
0.635
0.404
ISX
M05308_2.00
Homo sapiens
YTAATTRS
SYAATTAR
SELEX
Yin et al.(2017)
ISX_FL_Methyl-HT-SELEX_1
0.635
0.404
ISX
M05309_2.00
Homo sapiens
HTAAYGHN
NDCRTTAD
SELEX
Yin et al.(2017)
ISX_FL_Methyl-HT-SELEX_2
0.635
0.404
Awh
M02121_2.00
Drosophila melanogaster
NNTAATTANN
NNTAATTANN
PBM
Weirauch et al.(2014)
pTH5759
0.635
0.404
Awh
M03831_2.00
Drosophila melanogaster
BTAATTRV
BYAATTAV
SELEX
Nitta et al.(2015)
Awh_1
0.635
0.404
Awh
M06513_2.00
Drosophila melanogaster
YTAATTA
TAATTAR
B1H
Mathelier et al.(2014)
MA0167.1
0.635
0.404
Awh
M06303_2.00
Drosophila melanogaster
YTAATTA
TAATTAR
B1H
Zhu et al.(2011)
Awh_Cell_FBgn0013751
0.635
0.404
Awh
M06304_2.00
Drosophila melanogaster
YTAATKR
YMATTAR
B1H
Zhu et al.(2011)
Awh_SOLEXA_FBgn0013751
0.635
0.404
lim-4
M02182_2.00
Caenorhabditis elegans
YTAATTRVN
NBYAATTAR
PBM
Weirauch et al.(2014)
pTH6366
0.634
0.368
PHOX2B
M00282_2.00
Homo sapiens
TAATTRRY
RYYAATTA
PBM
Barrera et al.(2016)
PHOX2B_REF
0.626
0.439
Phox2a
M00400_2.00
Mus musculus
NNHAAYNN
NNRTTDNN
PBM
Berger et al.(2008)
Phox2a_3947
0.626
0.439
Phox2b
M00401_2.00
Mus musculus
NNHAAYNN
NNRTTDNN
PBM
Berger et al.(2008)
Phox2b_3948
0.626
0.439
PHOX2A
M03194_2.00
Homo sapiens
TAATTRVRTTA
TAAYBYAATTA
SELEX
Jolma et al.(2013)
PHOX2A_1
0.626
0.439
PHOX2B
M03113_2.00
Homo sapiens
TAATTRVRTTA
TAAYBYAATTA
SELEX
Jolma et al.(2013)
PHOX2B_1
0.626
0.439
PHOX2B
M03114_2.00
Homo sapiens
TAATTRVRTTA
TAAYBYAATTA
SELEX
Jolma et al.(2013)
PHOX2B_2
0.626
0.439
PHOX2A
M05244_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
PHOX2A_eDBD_HT-SELEX
0.626
0.439
PHOX2B
M05008_2.00
Homo sapiens
BTAATYRV
BYRATTAV
SELEX
Yin et al.(2017)
PHOX2B_eDBD_HT-SELEX
0.626
0.439
PHOX2B
M05010_2.00
Homo sapiens
TAATTWRATTA
TAATYWAATTA
SELEX
Yin et al.(2017)
PHOX2B_FL_HT-SELEX
0.626
0.439
Phox2a
M09564_2.00
Mus musculus
NTAATBNRATTA
TAATYNVATTAN
Misc
Heinz et al.(2010)
Neuron-Phox2a_GSE31456
0.626
0.439
PHOX2B
M00278_2.00
Homo sapiens
NNNNNRY
RYNNNNN
PBM
Barrera et al.(2016)
PHOX2B_Q143R
0.626
0.439
PHOX2B
M00280_2.00
Homo sapiens
NNNHATAAWTDNN
NNHAWTTATDNNN
PBM
Barrera et al.(2016)
PHOX2B_R141G
0.626
0.439
PHOX2B
M00281_2.00
Homo sapiens
NNNNNNNNRY
RYNNNNNNNN
PBM
Barrera et al.(2016)
PHOX2B_R141Q
0.626
0.439
PHOX2A
M05245_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
PHOX2A_eDBD_Methyl-HT-SELEX
0.626
0.439
PHOX2B
M05009_2.00
Homo sapiens
BTAATYRN
NYRATTAV
SELEX
Yin et al.(2017)
PHOX2B_eDBD_Methyl-HT-SELEX
0.626
0.439
PHOX2B
M05011_2.00
Homo sapiens
TAATTHRATTA
TAATYDAATTA
SELEX
Yin et al.(2017)
PHOX2B_FL_Methyl-HT-SELEX
0.626
0.439
Sebox
M02097_2.00
Mus musculus
NHTTAATTAN
NTAATTAADN
PBM
Weirauch et al.(2014)
pTH6379
0.625
0.386
inv
M06491_2.00
Drosophila melanogaster
DYTAATTR
YAATTARH
B1H
Mathelier et al.(2014)
MA0229.1
0.624
0.368
inv
M06255_2.00
Drosophila melanogaster
DYTAATTR
YAATTARH
B1H
Zhu et al.(2011)
Inv_Cell_FBgn0001269
0.624
0.368
inv
M06256_2.00
Drosophila melanogaster
NHTAATTRV
BYAATTADN
B1H
Zhu et al.(2011)
inv_SOLEXA_2_FBgn0001269
0.624
0.368
inv
M06257_2.00
Drosophila melanogaster
NHTAATTRV
BYAATTADN
B1H
Zhu et al.(2011)
inv_SOLEXA_5_FBgn0001269
0.624
0.368
al
M03776_2.00
Drosophila melanogaster
TAAYBNVRTTA
TAAYBNVRTTA
SELEX
Nitta et al.(2015)
al_1
0.623
0.421
al
M06477_2.00
Drosophila melanogaster
TAATTAA
TTAATTA
B1H
Mathelier et al.(2014)
MA0208.1
0.623
0.421
al
M06212_2.00
Drosophila melanogaster
TAATTAA
TTAATTA
B1H
Zhu et al.(2011)
Al_Cell_FBgn0000061
0.623
0.421
al
M06213_2.00
Drosophila melanogaster
NNYTAATTR
YAATTARNN
B1H
Zhu et al.(2011)
Al_SOLEXA_FBgn0000061
0.623
0.421
SNAPOd2T00006145001
M02230_2.00
Oikopleura dioica
NNTRATKRNN
NNYMATYANN
PBM
Weirauch et al.(2014)
pTH5930
0.622
0.386
Duxbl1
M02099_2.00
Mus musculus
NTGATTRNN
NNYAATCAN
PBM
Weirauch et al.(2014)
pTH6453
0.621
0.368
PHO2
M00056_2.00
Saccharomyces cerevisiae
TAATAWWW
WWWTATTA
PBM
Badis et al.(2008)
PHO2_2074
0.620
0.386
PHO2
M01551_2.00
Saccharomyces cerevisiae
NYAATWWHN
NDWWATTRN
PBM
Zhu et al.(2009)
Pho2
0.620
0.386
PHO2
M02190_2.00
Saccharomyces cerevisiae
NNNDNATNDN
NHNATNHNNN
PBM
Weirauch et al.(2014)
pTH6406
0.620
0.386
PHO2
M07485_2.00
Saccharomyces cerevisiae
WTAWTW
WAWTAW
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0356.1
0.620
0.386
PHO2
M08572_2.00
Saccharomyces cerevisiae
WTAWTW
WAWTAW
Misc
DeBoer et al.(2011)
YDL106C_505
0.620
0.386
PHO2
M09583_2.00
Saccharomyces cerevisiae
BCCACGTGCY
RGCACGTGGV
Misc
Heinz et al.(2010)
Yeast-Pho2_GSE29506
0.620
0.386
VSX2
M00287_2.00
Homo sapiens
NYTAATTARN
NYTAATTARN
PBM
Barrera et al.(2016)
VSX2_REF
0.620
0.404
VSX2
M03124_2.00
Homo sapiens
YTAATTAN
NTAATTAR
SELEX
Jolma et al.(2013)
VSX2_1
0.620
0.404
VSX2
M05036_2.00
Homo sapiens
CTAATTAN
NTAATTAG
SELEX
Yin et al.(2017)
VSX2_eDBD_HT-SELEX
0.620
0.404
VSX2
M05039_2.00
Homo sapiens
GCYAATYWY
RWRATTRGC
SELEX
Yin et al.(2017)
VSX2_FL_HT-SELEX
0.620
0.404
Vsx2
M09180_2.00
Mus musculus
NNRGCTAATTAR
YTAATTAGCYNN
Misc
Kulakovskiy et al.(2013)
VSX2_MOUSE.H11MO.0.C
0.620
0.404
VSX2
M10676_2.00
Homo sapiens
HNNGCTAATTANBN
NVNTAATTAGCNND
Transfac
Matys et al.(2006)
V$CHX10_01
0.620
0.404
VSX2
M05037_2.00
Homo sapiens
VYAATTRR
YYAATTRB
SELEX
Yin et al.(2017)
VSX2_eDBD_Methyl-HT-SELEX_1
0.620
0.404
VSX2
M05038_2.00
Homo sapiens
NTAAYKHN
NDMRTTAN
SELEX
Yin et al.(2017)
VSX2_eDBD_Methyl-HT-SELEX_2
0.620
0.404
VSX2
M05040_2.00
Homo sapiens
NTAAYKVN
NBMRTTAN
SELEX
Yin et al.(2017)
VSX2_FL_Methyl-HT-SELEX_1
0.620
0.404
VSX2
M05041_2.00
Homo sapiens
GCYAATYWY
RWRATTRGC
SELEX
Yin et al.(2017)
VSX2_FL_Methyl-HT-SELEX_2
0.620
0.404
VSX2
M00285_2.00
Homo sapiens
NDTWTATTHNNN
NNNDAATAWAHN
PBM
Barrera et al.(2016)
VSX2_R200P
0.620
0.386
VSX2
M00286_2.00
Homo sapiens
YRWKWNN
NNWMWYR
PBM
Barrera et al.(2016)
VSX2_R200Q
0.620
0.386
Pph13
M03845_2.00
Drosophila melanogaster
NTAATTRN
NYAATTAN
SELEX
Nitta et al.(2015)
Pph13_1
0.619
0.404
Pph13
M06522_2.00
Drosophila melanogaster
NTAATTR
YAATTAN
B1H
Mathelier et al.(2014)
MA0200.1
0.619
0.404
Pph13
M06321_2.00
Drosophila melanogaster
NHTAATTR
YAATTADN
B1H
Zhu et al.(2011)
Pph13_Cell_FBgn0023489
0.619
0.404
Pph13
M06322_2.00
Drosophila melanogaster
YTAATTR
YAATTAR
B1H
Zhu et al.(2011)
Pph13_SOLEXA_FBgn0023489
0.619
0.404
DRGX
M03199_2.00
Homo sapiens
NTAATTNRATTAN
NTAATYNAATTAN
SELEX
Jolma et al.(2013)
DRGX_1
0.618
0.404
CG2808
M03875_2.00
Drosophila melanogaster
TAATYNSRTTA
TAAYSNRATTA
SELEX
Nitta et al.(2015)
CG2808_1
0.618
0.404
DRGX
M05253_2.00
Homo sapiens
NTAATTRR
YYAATTAN
SELEX
Yin et al.(2017)
DRGX_eDBD_HT-SELEX
0.618
0.404
Drgx
M10774_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRRXL1_01
0.618
0.404
DRGX
M05254_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
DRGX_eDBD_Methyl-HT-SELEX
0.618
0.404
SHOX
M02095_2.00
Homo sapiens
NTAATTRN
NYAATTAN
PBM
Weirauch et al.(2014)
pTH5805
0.616
0.439
Shox2
M00439_2.00
Mus musculus
NTAATDDN
NHHATTAN
PBM
Berger et al.(2008)
Shox2_2641
0.616
0.439
SHOX
M03232_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
SHOX_1
0.616
0.439
SHOX2
M03204_2.00
Homo sapiens
BTAATTRN
NYAATTAV
SELEX
Jolma et al.(2013)
SHOX2_1
0.616
0.439
Shox2
M03263_2.00
Mus musculus
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
Shox2_1
0.616
0.439
CG5369
M03876_2.00
Drosophila melanogaster
TAATTHVATTA
TAATBDAATTA
SELEX
Nitta et al.(2015)
CG5369_1
0.616
0.439
CG5369
M03877_2.00
Drosophila melanogaster
TAATTRNNTAATBN
NVATTANNYAATTA
SELEX
Nitta et al.(2015)
CG5369_2
0.616
0.439
CG5369
M03878_2.00
Drosophila melanogaster
TAATTVRATWA
TWATYBAATTA
SELEX
Nitta et al.(2015)
CG5369_3
0.616
0.439
SHOX
M05366_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
SHOX_eDBD_HT-SELEX
0.616
0.439
Shox2
M10772_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SHOX2_05
0.616
0.439
SHOX
M05367_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
SHOX_eDBD_Methyl-HT-SELEX_1
0.616
0.439
SHOX
M05368_2.00
Homo sapiens
NTAAYGAN
NTCRTTAN
SELEX
Yin et al.(2017)
SHOX_eDBD_Methyl-HT-SELEX_2
0.616
0.439
Mixl1
M10765_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MIXL1_03
0.616
0.404
Uncx
M00443_2.00
Mus musculus
NTAATNDN
NHNATTAN
PBM
Berger et al.(2008)
Uncx4
0.616
0.404
uncx
M02111_2.00
Tetraodon nigroviridis
NNTAATTRN
NYAATTANN
PBM
Weirauch et al.(2014)
pTH5474
0.616
0.404
UNCX
M03191_2.00
Homo sapiens
NWAATTVVRTHWN
NWDAYBBAATTWN
SELEX
Jolma et al.(2013)
UNCX_1
0.616
0.404
UNCX
M03192_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
UNCX_2
0.616
0.404
Uncx
M03264_2.00
Mus musculus
NTAATTVRATTAN
NTAATYBAATTAN
SELEX
Jolma et al.(2013)
Uncx_1
0.616
0.404
Uncx
M03265_2.00
Mus musculus
NTAATTRR
YYAATTAN
SELEX
Jolma et al.(2013)
Uncx_2
0.616
0.404
UNCX
M05240_2.00
Homo sapiens
NYAATTRV
BYAATTRN
SELEX
Yin et al.(2017)
UNCX_eDBD_HT-SELEX
0.616
0.404
UNCX
M05241_2.00
Homo sapiens
NYRRYKNN
NNMRYYRN
SELEX
Yin et al.(2017)
UNCX_eDBD_Methyl-HT-SELEX
0.616
0.404
VSX1
M00269_2.00
Homo sapiens
NNWAAYNNN
NNNRTTWNN
PBM
Barrera et al.(2016)
VSX1_REF
0.616
0.386
Vsx1
M00459_2.00
Mus musculus
NNTAATDDN
NHHATTANN
PBM
Berger et al.(2008)
Vsx1_1728
0.616
0.386
Vsx1
M03267_2.00
Mus musculus
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
Vsx1_1
0.616
0.386
VSX1
M00266_2.00
Homo sapiens
NNTAAYNNN
NNNRTTANN
PBM
Barrera et al.(2016)
VSX1_G160D
0.616
0.386
prd-b
M02077_2.00
Ciona intestinalis
NTRATTRNN
NNYAATYAN
PBM
Weirauch et al.(2014)
pTH6284
0.616
0.421
ARX
M00264_2.00
Homo sapiens
NNWRATNNN
NNNATYWNN
PBM
Barrera et al.(2016)
ARX_REF
0.615
0.404
Arx
M00467_2.00
Mus musculus
NTAATTDN
NHAATTAN
PBM
Berger et al.(2008)
Arx_1738
0.615
0.404
Alx1
M00471_2.00
Mus musculus
NTAATTRN
NYAATTAN
PBM
Berger et al.(2008)
Cart1_0997
0.615
0.404
Alx1
M00472_2.00
Mus musculus
NTAATDDN
NHHATTAN
PBM
Berger et al.(2008)
Cart1_1275
0.615
0.404
Alx4
M00487_2.00
Mus musculus
NTAATDDN
NHHATTAN
PBM
Berger et al.(2008)
Alx4_1744
0.615
0.404
ALX4
M03079_2.00
Homo sapiens
NTAATYNRRTTAN
NTAAYYNRATTAN
SELEX
Jolma et al.(2013)
ALX4_1
0.615
0.404
ARX
M03076_2.00
Homo sapiens
NTAATYNRATTAN
NTAATYNRATTAN
SELEX
Jolma et al.(2013)
ARX_1
0.615
0.404
ALX1
M03226_2.00
Homo sapiens
NTAATTRVRTTAN
NTAAYBYAATTAN
SELEX
Jolma et al.(2013)
CART1_1
0.615
0.404
Alx1
M03272_2.00
Mus musculus
NNTAATTRRD
HYYAATTANN
SELEX
Jolma et al.(2013)
Alx1_1
0.615
0.404
Alx1
M03273_2.00
Mus musculus
NTAATYNRATTAN
NTAATYNRATTAN
SELEX
Jolma et al.(2013)
Alx1_2
0.615
0.404
Alx4
M03278_2.00
Mus musculus
NTAATYNRATTAN
NTAATYNRATTAN
SELEX
Jolma et al.(2013)
Alx4_1
0.615
0.404
Arx
M03269_2.00
Mus musculus
NTAATYNRATTAN
NTAATYNRATTAN
SELEX
Jolma et al.(2013)
Arx_1
0.615
0.404
ALX1
M05327_2.00
Homo sapiens
TAATYTAATTA
TAATTARATTA
SELEX
Yin et al.(2017)
ALX1_FL_HT-SELEX
0.615
0.404
ALX4
M04917_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
ALX4_eDBD_HT-SELEX
0.615
0.404
ARX
M04895_2.00
Homo sapiens
BTAATTRR
YYAATTAV
SELEX
Yin et al.(2017)
ARX_eDBD_HT-SELEX
0.615
0.404
ALX1
M09160_2.00
Homo sapiens
VTAATYRVATTA
TAATBYRATTAB
Misc
Kulakovskiy et al.(2013)
ALX1_HUMAN.H11MO.0.B
0.615
0.404
Alx1
M09201_2.00
Mus musculus
VTAATYRVATTA
TAATBYRATTAB
Misc
Kulakovskiy et al.(2013)
ALX1_MOUSE.H11MO.0.B
0.615
0.404
ALX4
M10637_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ALX4_01
0.615
0.404
Arx
M10775_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ARX_05
0.615
0.404
ALX1
M10741_2.00
Homo sapiens
VVHTAATKNNHATTABYN
NRVTAATDNNMATTADBB
Transfac
Matys et al.(2006)
V$CART1_01
0.615
0.404
ALX1
M05328_2.00
Homo sapiens
TAATYTAATTA
TAATTARATTA
SELEX
Yin et al.(2017)
ALX1_FL_Methyl-HT-SELEX
0.615
0.404
ARX
M04896_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
ARX_eDBD_Methyl-HT-SELEX
0.615
0.404
ALX4
M04918_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
ALX4_eDBD_Methyl-HT-SELEX_1
0.615
0.404
ALX4
M04919_2.00
Homo sapiens
NTWAYGHN
NDCRTWAN
SELEX
Yin et al.(2017)
ALX4_eDBD_Methyl-HT-SELEX_2
0.615
0.404
unc-4
M03846_2.00
Drosophila melanogaster
TAATTNAATTA
TAATTNAATTA
SELEX
Nitta et al.(2015)
unc-4_1
0.615
0.386
unc-4
M06523_2.00
Drosophila melanogaster
YTAATTR
YAATTAR
B1H
Mathelier et al.(2014)
MA0250.1
0.615
0.386
ARX
M00260_2.00
Homo sapiens
NMTAATTANNN
NNNTAATTAKN
PBM
Barrera et al.(2016)
ARX_L343Q
0.615
0.386
OdsH
M03851_2.00
Drosophila melanogaster
NTAATTRN
NYAATTAN
SELEX
Nitta et al.(2015)
OdsH_1
0.615
0.368
OdsH
M03852_2.00
Drosophila melanogaster
TAATBNVATTA
TAATBNVATTA
SELEX
Nitta et al.(2015)
OdsH_2
0.615
0.368
OdsH
M06528_2.00
Drosophila melanogaster
BTAATTR
YAATTAV
B1H
Mathelier et al.(2014)
MA0198.1
0.615
0.368
OdsH
M06330_2.00
Drosophila melanogaster
BTAATTR
YAATTAV
B1H
Zhu et al.(2011)
Odsh_Cell_FBgn0026058
0.615
0.368
OdsH
M06331_2.00
Drosophila melanogaster
NHTAATTR
YAATTADN
B1H
Zhu et al.(2011)
Odsh_SOLEXA_FBgn0026058
0.615
0.368
ARX
M00261_2.00
Homo sapiens
NNWRAYNNN
NNNRTYWNN
PBM
Barrera et al.(2016)
ARX_P353L
0.615
0.386
ARX
M00262_2.00
Homo sapiens
ATAATTAT
ATAATTAT
PBM
Barrera et al.(2016)
ARX_P353R
0.615
0.386
PHDP
M03849_2.00
Drosophila melanogaster
NTAATKNVATTAN
NTAATBNMATTAN
SELEX
Nitta et al.(2015)
PHDP_1
0.615
0.404
PHDP
M06525_2.00
Drosophila melanogaster
HTAATTD
HAATTAD
B1H
Mathelier et al.(2014)
MA0457.1
0.615
0.404
PHDP
M06325_2.00
Drosophila melanogaster
HTAATT
AATTAD
B1H
Zhu et al.(2011)
PhdP_Cell_FBgn0025334
0.615
0.404
PHDP
M06326_2.00
Drosophila melanogaster
YTAATT
AATTAR
B1H
Zhu et al.(2011)
PhdP_SOLEXA_FBgn0025334
0.615
0.404
CG11294
M03855_2.00
Drosophila melanogaster
TAATTVVATTA
TAATBBAATTA
SELEX
Nitta et al.(2015)
CG11294_1
0.614
0.439
CG11294
M03856_2.00
Drosophila melanogaster
TAATTDVATTA
TAATBHAATTA
SELEX
Nitta et al.(2015)
CG11294_2
0.614
0.439
CG11294
M06531_2.00
Drosophila melanogaster
TAATTAA
TTAATTA
B1H
Mathelier et al.(2014)
MA0172.1
0.614
0.439
CG11294
M06337_2.00
Drosophila melanogaster
TAATTAA
TTAATTA
B1H
Zhu et al.(2011)
CG11294_Cell_FBgn0030058
0.614
0.439
CG11294
M06338_2.00
Drosophila melanogaster
HTAATTR
YAATTAD
B1H
Zhu et al.(2011)
CG11294_SOLEXA_FBgn0030058
0.614
0.439
PROP1
M00317_2.00
Homo sapiens
HAAYNNNNNN
NNNNNNRTTD
PBM
Barrera et al.(2016)
PROP1_REF
0.613
0.386
Prop1
M00498_2.00
Mus musculus
NRAKDDN
NHHMTYN
PBM
Berger et al.(2008)
Prop1_3949
0.613
0.386
PROP1
M03216_2.00
Homo sapiens
TAATTHRATTA
TAATYDAATTA
SELEX
Jolma et al.(2013)
PROP1_1
0.613
0.386
PROP1
M03217_2.00
Homo sapiens
TAATKNRRTTA
TAAYYNMATTA
SELEX
Jolma et al.(2013)
PROP1_2
0.613
0.386
PROP1
M05298_2.00
Homo sapiens
WAATTNNRTTD
HAAYNNAATTW
SELEX
Yin et al.(2017)
PROP1_eDBD_HT-SELEX
0.613
0.386
PROP1
M05301_2.00
Homo sapiens
TAATTNVATTA
TAATBNAATTA
SELEX
Yin et al.(2017)
PROP1_FL_HT-SELEX
0.613
0.386
Prop1
M09210_2.00
Mus musculus
TAATKRRATTA
TAATYYMATTA
Misc
Kulakovskiy et al.(2013)
PROP1_MOUSE.H11MO.0.C
0.613
0.386
PROP1
M10777_2.00
Sus scrofa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PROP1_01
0.613
0.386
PROP1
M10737_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PROP1_Q2
0.613
0.386
PROP1
M00315_2.00
Homo sapiens
NNHNATNN
NNATNDNN
PBM
Barrera et al.(2016)
PROP1_R112Q
0.613
0.386
PROP1
M00316_2.00
Homo sapiens
DTAATTRK
MYAATTAH
PBM
Barrera et al.(2016)
PROP1_R99Q
0.613
0.386
PROP1
M05299_2.00
Homo sapiens
TAATTNVRTTW
WAAYBNAATTA
SELEX
Yin et al.(2017)
PROP1_eDBD_Methyl-HT-SELEX_1
0.613
0.386
PROP1
M05300_2.00
Homo sapiens
TAAYNDCRTTA
TAAYGHNRTTA
SELEX
Yin et al.(2017)
PROP1_eDBD_Methyl-HT-SELEX_2
0.613
0.386
PROP1
M05302_2.00
Homo sapiens
TAATTNVRTTA
TAAYBNAATTA
SELEX
Yin et al.(2017)
PROP1_FL_Methyl-HT-SELEX_1
0.613
0.386
PROP1
M05303_2.00
Homo sapiens
TAATYRVRTTA
TAAYBYRATTA
SELEX
Yin et al.(2017)
PROP1_FL_Methyl-HT-SELEX_2
0.613
0.386
MIXL1
M03231_2.00
Homo sapiens
NNTAATTRNN
NNYAATTANN
SELEX
Jolma et al.(2013)
MIXL1_1
0.612
0.386
MIXL1
M05359_2.00
Homo sapiens
TAATBNVATTA
TAATBNVATTA
SELEX
Yin et al.(2017)
MIXL1_FL_HT-SELEX
0.612
0.386
MIXL1
M10747_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MIXL1_02
0.612
0.386
MIXL1
M05360_2.00
Homo sapiens
TAATYNRATTA
TAATYNRATTA
SELEX
Yin et al.(2017)
MIXL1_FL_Methyl-HT-SELEX_1
0.612
0.386
MIXL1
M05361_2.00
Homo sapiens
TAATYDCRTTA
TAAYGHRATTA
SELEX
Yin et al.(2017)
MIXL1_FL_Methyl-HT-SELEX_2
0.612
0.386
hbn
M03813_2.00
Drosophila melanogaster
HTAATYTAATTAD
HTAATTARATTAD
SELEX
Nitta et al.(2015)
hbn_1
0.612
0.404
hbn
M06506_2.00
Drosophila melanogaster
TTAATTR
YAATTAA
B1H
Mathelier et al.(2014)
MA0226.1
0.612
0.404
hbn
M06291_2.00
Drosophila melanogaster
TWAWTTR
YAAWTWA
B1H
Zhu et al.(2011)
Hbn_Cell_FBgn0008636
0.612
0.404
hbn
M06292_2.00
Drosophila melanogaster
NHTAATTR
YAATTADN
B1H
Zhu et al.(2011)
Hbn_SOLEXA_FBgn0008636
0.612
0.404
Alx3
M00402_2.00
Mus musculus
WAATNDN
NHNATTW
PBM
Berger et al.(2008)
Alx3_3418
0.612
0.368
ALX3
M03172_2.00
Homo sapiens
NNTAATTRNN
NNYAATTANN
SELEX
Jolma et al.(2013)
ALX3_1
0.612
0.368
ALX3
M03173_2.00
Homo sapiens
NNTAATTRNN
NNYAATTANN
SELEX
Jolma et al.(2013)
ALX3_2
0.612
0.368
ALX3
M03174_2.00
Homo sapiens
NTAATYNRATTAN
NTAATYNRATTAN
SELEX
Jolma et al.(2013)
ALX3_3
0.612
0.368
CG32532
M03874_2.00
Drosophila melanogaster
NTAAYBNVRTTAN
NTAAYBNVRTTAN
SELEX
Nitta et al.(2015)
CG32532_1
0.612
0.368
ALX3
M05195_2.00
Homo sapiens
NTAATTRR
YYAATTAN
SELEX
Yin et al.(2017)
ALX3_eDBD_HT-SELEX
0.612
0.368
ALX3
M05198_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
ALX3_FL_HT-SELEX
0.612
0.368
CG32532
M06547_2.00
Drosophila melanogaster
YTAATTR
YAATTAR
B1H
Mathelier et al.(2014)
MA0179.1
0.612
0.368
CG32532
M06370_2.00
Drosophila melanogaster
YTAATTR
YAATTAR
B1H
Zhu et al.(2011)
CG32532_Cell_FBgn0052532
0.612
0.368
CG32532
M06371_2.00
Drosophila melanogaster
HTAATTR
YAATTAD
B1H
Zhu et al.(2011)
CG32532_SOLEXA_FBgn0052532
0.612
0.368
ALX3
M05196_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
ALX3_eDBD_Methyl-HT-SELEX_1
0.612
0.368
ALX3
M05197_2.00
Homo sapiens
NTAAYBHN
NDVRTTAN
SELEX
Yin et al.(2017)
ALX3_eDBD_Methyl-HT-SELEX_2
0.612
0.368
ALX3
M05199_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
ALX3_FL_Methyl-HT-SELEX_1
0.612
0.368
ALX3
M05200_2.00
Homo sapiens
NTAAYGHN
NDCRTTAN
SELEX
Yin et al.(2017)
ALX3_FL_Methyl-HT-SELEX_2
0.612
0.368
vsx2
M02079_2.00
Danio rerio
NNYTAATTARN
NYTAATTARNN
PBM
Weirauch et al.(2014)
pTH6221
0.608
0.386
Gbx2
M00462_2.00
Mus musculus
NNDAHNN
NNDTHNN
PBM
Berger et al.(2008)
Gbx2_3110
0.606
0.404
Gbx1
M00525_2.00
Mus musculus
NNTAATNR
YNATTANN
PBM
Berger et al.(2008)
Gbx1_2883
0.606
0.404
GBX1
M03193_2.00
Homo sapiens
NBTAATTRSB
VSYAATTAVN
SELEX
Jolma et al.(2013)
GBX1_1
0.606
0.404
GBX2
M03201_2.00
Homo sapiens
NNTAATTRNN
NNYAATTANN
SELEX
Jolma et al.(2013)
GBX2_1
0.606
0.404
GBX2
M03202_2.00
Homo sapiens
TAATTRVBCAATWA
TWATTGVBYAATTA
SELEX
Jolma et al.(2013)
GBX2_2
0.606
0.404
GBX2
M03203_2.00
Homo sapiens
NNTAATTRNN
NNYAATTANN
SELEX
Jolma et al.(2013)
GBX2_3
0.606
0.404
Gbx1
M03286_2.00
Mus musculus
NNTAATTRNN
NNYAATTANN
SELEX
Jolma et al.(2013)
Gbx1_1
0.606
0.404
Gbx2
M03268_2.00
Mus musculus
NNTAATTRNN
NNYAATTANN
SELEX
Jolma et al.(2013)
Gbx2_1
0.606
0.404
unpg
M03836_2.00
Drosophila melanogaster
SSTAATYRVN
NBYRATTASS
SELEX
Nitta et al.(2015)
unpg_1
0.606
0.404
GBX2
M05265_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
GBX2_eDBD_HT-SELEX
0.606
0.404
GBX2
M05268_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
GBX2_FL_HT-SELEX
0.606
0.404
unpg
M06517_2.00
Drosophila melanogaster
BTAATTR
YAATTAV
B1H
Mathelier et al.(2014)
MA0251.1
0.606
0.404
unpg
M06311_2.00
Drosophila melanogaster
NBTAATTR
YAATTAVN
B1H
Zhu et al.(2011)
Unpg_Cell_FBgn0015561
0.606
0.404
unpg
M06312_2.00
Drosophila melanogaster
HTAATTR
YAATTAD
B1H
Zhu et al.(2011)
Unpg_SOLEXA_FBgn0015561
0.606
0.404
GBX2
M05266_2.00
Homo sapiens
HTAAYGAB
VTCRTTAD
SELEX
Yin et al.(2017)
GBX2_eDBD_Methyl-HT-SELEX_1
0.606
0.404
GBX2
M05267_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
GBX2_eDBD_Methyl-HT-SELEX_2
0.606
0.404
GBX2
M05269_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
GBX2_FL_Methyl-HT-SELEX_1
0.606
0.404
GBX2
M05270_2.00
Homo sapiens
NTAAYGAB
VTCRTTAN
SELEX
Yin et al.(2017)
GBX2_FL_Methyl-HT-SELEX_2
0.606
0.404
ISX
M00318_2.00
Homo sapiens
DTAATTRK
MYAATTAH
PBM
Barrera et al.(2016)
ISX_R83Q
0.604
0.386
VSX1
M00267_2.00
Homo sapiens
NNHAAYNNN
NNNRTTDNN
PBM
Barrera et al.(2016)
VSX1_Q175H
0.604
0.368
mixl1.S
M02233_2.00
Xenopus laevis
NHTAATTAANN
NNTTAATTADN
PBM
Weirauch et al.(2014)
pTH6163
0.604
0.404
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SMAR003378-PA
Homeodomain
33
89
RRKRTSITSSQLQKLEQLFKEEPWPSRESKENLAEEIGMSPQFVNIWFQNKRARIKK
Links
Other
Homeodomain
family TFs
Other
Strigamia maritima
TFs
2268 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy