Smp_149230 (Schistosoma mansoni)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Smp_149230 T223497_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Irx4
M00416_2.00
Mus musculus
NNNDAMAH

DTKTHNNN
PBM
Berger et al.(2008)
Irx4_2242
0.679 0.912
CBG08197
M02064_2.00
Caenorhabditis briggsae
NNDACDNN

NNHGTHNN
PBM
Weirauch et al.(2014)
pTH6408
0.678 0.702
ara
M06518_2.00
Drosophila melanogaster
WWACA

TGTWW
B1H
Mathelier et al.(2014)
MA0210.1
0.658 0.895
ara
M06313_2.00
Drosophila melanogaster
TGTWWWNN

NNWWWACA
B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904
0.658 0.895
ara
M06314_2.00
Drosophila melanogaster
DWWACA

TGTWWH
B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904
0.658 0.895
Irx6
M00456_2.00
Mus musculus
NNDAHWN

NWDTHNN
PBM
Berger et al.(2008)
Irx6_2623
0.658 0.877
caup
M06519_2.00
Drosophila melanogaster
WAACA

TGTTW
B1H
Mathelier et al.(2014)
MA0217.1
0.650 0.860
caup
M06315_2.00
Drosophila melanogaster
HWDWAACA

TGTTWHWD
B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919
0.650 0.860
caup
M06316_2.00
Drosophila melanogaster
NDDACA

TGTHHN
B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919
0.650 0.860
Irx2
M00386_2.00
Mus musculus
NNDACAHNN

NNDTGTHNN
PBM
Berger et al.(2008)
Irx2_0900
0.638 0.842
Irx5
M00455_2.00
Mus musculus
NNNDACAHN

NDTGTHNNN
PBM
Berger et al.(2008)
Irx5_2385
0.638 0.842
IRX2
M03212_2.00
Homo sapiens
NDACAYRACAHN

NDTGTYRTGTHN
SELEX
Jolma et al.(2013)
IRX2_1
0.638 0.842
IRX5
M03222_2.00
Homo sapiens
NDACAYRACAHN

NDTGTYRTGTHN
SELEX
Jolma et al.(2013)
IRX5_1
0.638 0.842
IRX5
M05315_2.00
Homo sapiens
NBDTGTHNDACAYVN

NBRTGTHNDACAHVN
SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX
0.638 0.842
IRX5
M05316_2.00
Homo sapiens
WYRYGHHNHAYRYRY

RYRYRTDNDDCRYRW
SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX
0.638 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Smp_149230.1:pep Homeodomain 324 383

Links

Other Homeodomain family TFs
Other Schistosoma mansoni TFs

Invalid Input OrderBy

366 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action