Solyc02g077660.2 (Solanum lycopersicum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Solyc02g077660.2 T223551_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RLT1
M02038_2.00
Arabidopsis thaliana
NDHTCWWN

NWWGADHN
PBM
Weirauch et al.(2014)
pTH5432
0.833 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc02g077660.2.1 Homeodomain 23 79

Links

Other Homeodomain family TFs
Other Solanum lycopersicum TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
RLT1 Arabidopsis thaliana AT1G28420 D 0.833
TCM_029805 Theobroma cacao TCM_029805 I 0.824
mgf006858m Mimulus guttatus mgf006858m I 0.807
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.697
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.838
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.659
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.658
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.837
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.658
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.649
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.840
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.857
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.649
mgf006635m Mimulus guttatus mgf006635m I 0.786
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.611
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.840
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.834
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.665
Ca_00337 Cicer arietinum Ca_00337 I 0.835
Ca_06343 Cicer arietinum Ca_06343 I 0.835
Ca_11272 Cicer arietinum Ca_11272 I 0.659
Cla009803 Citrullus lanatus Cla009803 I 0.840
Pm010098 Prunus mume Pm010098 I 0.840
29983.m003128 Ricinus communis 29983.m003128 I 0.653
30190.m011307 Ricinus communis 30190.m011307 I 0.795
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.840
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.653
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.840
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.756
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.627
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.620
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.620
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.840
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.839
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.653
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.653
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.653
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.653
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.659
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.838
PK06068.1 Cannabis sativa PK06068.1 I 0.661
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.649
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.840
MDP0000288192 Malus domestica MDP0000288192 I 0.828
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.840
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.649
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.824
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.824
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.827
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.838
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.839
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.617
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.838
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.617
MDP0000192108 Malus domestica MDP0000192108 I 0.840
PK13272.1 Cannabis sativa PK13272.1 I 0.833
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.627
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.681
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.835
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.835
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.835
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.627
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.619
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.619
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.627
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.653
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.627
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.664
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.659
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.837
F775_01844 Aegilops tauschii F775_01844 I 0.625
RLT2 Arabidopsis thaliana AT5G44180 I 0.642
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.627
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.664
Bo3g143570 Brassica oleracea Bo3g143570 I 0.804
Bo5g055970 Brassica oleracea Bo5g055970 I 0.837
Bo7g067190 Brassica oleracea Bo7g067190 I 0.646
Bra010869 Brassica rapa Bra010869 I 0.804
Bra032908 Brassica rapa Bra032908 I 0.836
Bra033725 Brassica rapa Bra033725 I 0.645
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.628
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.625
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.625
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.840
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.835
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.653
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.840
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.627
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.627
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.618
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.618
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.631
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.631
Si004333m.g Setaria italica Si004333m.g I 0.627
Si020949m.g Setaria italica Si020949m.g I 0.621
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.665
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.829
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.653
OS01G0672201 Oryza sativa OS01G0672201 I 0.627
OB01G35240 Oryza brachyantha OB01G35240 I 0.627
OBART05G25730 Oryza barthii OBART05G25730 I 0.664
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.627
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.664
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.627
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.627
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.664
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.627
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.664
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.627
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.664
TCM_008214 Theobroma cacao TCM_008214 I 0.653