Solyc03g034120.2 (Solanum lycopersicum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Solyc03g034120.2 T223563_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q39944_HELAN
M10802_2.00 		Helianthus annuus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HAHB4_01 		0.637 0.456
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.623 0.561
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.618 0.596
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.618 0.596
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.601 0.579
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.601 0.579
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.601 0.579
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc03g034120.2.1 Homeodomain 54 110

Links

Other Homeodomain family TFs
Other Solanum lycopersicum TFs

133 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.824
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.814
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.814
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.813
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I 0.808
Ciclev10016895m.g Citrus clementina Ciclev10016895m.g I 0.681
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.655
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.655
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.655
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.641
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.640
Q39944_HELAN Helianthus annuus Q39944_HELAN D 0.637
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.635
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.633
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.633
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.633
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.633
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.631
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.631
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.629
Eucgr.I02464 Eucalyptus grandis Eucgr.I02464 I 0.627
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.625
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.623
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.623
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.623
Si030983m.g Setaria italica Si030983m.g I 0.623
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.623
Bo4g034490 Brassica oleracea Bo4g034490 I 0.623
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.623
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.623
Bra005259 Brassica rapa Bra005259 I 0.623
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.623
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.619
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.619
Bo9g165360 Brassica oleracea Bo9g165360 I 0.618
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.618
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.618
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.618
29822.m003500 Ricinus communis 29822.m003500 I 0.618
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.618
Bra006285 Brassica rapa Bra006285 I 0.618
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.618
Cla010510 Citrullus lanatus Cla010510 I 0.618
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.618
Pm015861 Prunus mume Pm015861 I 0.618
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.618
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.618
HAT7 Arabidopsis thaliana AT5G15150 I 0.618
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.618
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.618
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.618
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.618
Bo2g012410 Brassica oleracea Bo2g012410 I 0.618
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.618
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.618
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.618
MDP0000737128 Malus domestica MDP0000737128 I 0.618
Bo3g010120 Brassica oleracea Bo3g010120 I 0.618
Ca_10527 Cicer arietinum Ca_10527 I 0.618
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.618
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.618
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.618
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.618
MDP0000124827 Malus domestica MDP0000124827 I 0.618
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.618
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.618
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.618
Bra023506 Brassica rapa Bra023506 I 0.618
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.618
PK20392.1 Cannabis sativa PK20392.1 D 0.618
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.618
TCM_018470 Theobroma cacao TCM_018470 I 0.618
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.618
Bra008717 Brassica rapa Bra008717 I 0.618
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.617
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.615
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.613
MDP0000316497 Malus domestica MDP0000316497 I 0.613
MTR_8g026960 Medicago truncatula MTR_8g026960 I 0.613
Ca_17608 Cicer arietinum Ca_17608 I 0.613
Pm018314 Prunus mume Pm018314 I 0.613
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.611
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.611
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.609
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.609
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.609
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.609
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.608
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.608
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.608
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.608
Bra022687 Brassica rapa Bra022687 I 0.608
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.608
Bo2g042250 Brassica oleracea Bo2g042250 I 0.608
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.608
mgf013301m Mimulus guttatus mgf013301m I 0.607
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.605
Bo3g002560 Brassica oleracea Bo3g002560 I 0.605
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.603
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.603
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.602
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.602
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.602
mgf022748m Mimulus guttatus mgf022748m I 0.602
MDP0000119544 Malus domestica MDP0000119544 I 0.601
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.601
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.601
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.601
MDP0000738604 Malus domestica MDP0000738604 I 0.601
MDP0000134241 Malus domestica MDP0000134241 I 0.601
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.601
Cla018017 Citrullus lanatus Cla018017 I 0.601
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.601
TCM_022391 Theobroma cacao TCM_022391 I 0.601
Cla018641 Citrullus lanatus Cla018641 I 0.601
Pm026270 Prunus mume Pm026270 I 0.601
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.601
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.601
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.601
Bo9g181720 Brassica oleracea Bo9g181720 I 0.601
Bra009510 Brassica rapa Bra009510 I 0.601
29815.m000499 Ricinus communis 29815.m000499 I 0.601
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.601
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.601
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.601
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.601
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.601
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.601
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.601
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.601
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.601
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.601
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.601