Solyc03g034130.2 (Solanum lycopersicum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Solyc03g034130.2 T223564_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN

NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
0.627 0.561
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.622 0.596
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.622 0.596
Q39944_HELAN
M10802_2.00
Helianthus annuus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HAHB4_01
0.621 0.439
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN

NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.605 0.561
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD

HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.605 0.561
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA

TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.605 0.561
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD

HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.602 0.561
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD

HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.602 0.561
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc03g034130.2.1 Homeodomain 60 116

Links

Other Homeodomain family TFs
Other Solanum lycopersicum TFs

120 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.860
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.860
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.859
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.851
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.808
Ciclev10016895m.g Citrus clementina Ciclev10016895m.g I 0.686
Eucgr.I02464 Eucalyptus grandis Eucgr.I02464 I 0.663
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.652
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.644
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.643
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.641
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.629
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.627
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.627
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.627
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.627
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.627
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.627
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.627
Bo4g034490 Brassica oleracea Bo4g034490 I 0.627
Bra005259 Brassica rapa Bra005259 I 0.627
PK20392.1 Cannabis sativa PK20392.1 D 0.622
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.622
29822.m003500 Ricinus communis 29822.m003500 I 0.622
MDP0000737128 Malus domestica MDP0000737128 I 0.622
Ca_10527 Cicer arietinum Ca_10527 I 0.622
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.622
TCM_018470 Theobroma cacao TCM_018470 I 0.622
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.622
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.622
Cla010510 Citrullus lanatus Cla010510 I 0.622
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.622
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.622
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.622
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.622
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.622
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.622
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.622
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.622
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.622
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.622
MDP0000124827 Malus domestica MDP0000124827 I 0.622
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.622
Pm015861 Prunus mume Pm015861 I 0.622
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.622
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.622
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.622
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.622
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.622
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.622
Bra023506 Brassica rapa Bra023506 I 0.622
Bra008717 Brassica rapa Bra008717 I 0.622
Bo2g012410 Brassica oleracea Bo2g012410 I 0.622
HAT7 Arabidopsis thaliana AT5G15150 I 0.622
Bo3g010120 Brassica oleracea Bo3g010120 I 0.622
Bo9g165360 Brassica oleracea Bo9g165360 I 0.622
Bra006285 Brassica rapa Bra006285 I 0.622
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.622
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.622
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.622
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.622
Q39944_HELAN Helianthus annuus Q39944_HELAN D 0.621
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.619
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.616
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.615
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.615
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.615
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.614
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.614
Bo3g002560 Brassica oleracea Bo3g002560 I 0.609
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.607
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.607
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.607
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.607
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.607
mgf022748m Mimulus guttatus mgf022748m I 0.607
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.607
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.605
Bo9g181720 Brassica oleracea Bo9g181720 I 0.605
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.605
TCM_022391 Theobroma cacao TCM_022391 I 0.605
Bra009510 Brassica rapa Bra009510 I 0.605
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.605
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.605
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.605
MDP0000134241 Malus domestica MDP0000134241 I 0.605
MDP0000738604 Malus domestica MDP0000738604 I 0.605
MDP0000119544 Malus domestica MDP0000119544 I 0.605
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.605
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.605
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.605
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.605
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.605
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.605
Pm026270 Prunus mume Pm026270 I 0.605
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.605
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.605
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.605
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.605
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.605
Cla018017 Citrullus lanatus Cla018017 I 0.605
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.605
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.605
Cla018641 Citrullus lanatus Cla018641 I 0.605
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.605
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.605
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.605
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.605
29815.m000499 Ricinus communis 29815.m000499 I 0.605
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.603
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.602
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.602
Bra039135 Brassica rapa Bra039135 I 0.602
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.602
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.602
Bo1g158730 Brassica oleracea Bo1g158730 I 0.602
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.602
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.602
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.602
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.601