CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Solyc10g005330.2
(
Solanum lycopersicum
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
Solyc10g005330.2
T223623_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATML1
M02048_2.00
Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN
PBM
Weirauch et al.(2014)
pTH8203
0.821
0.860
PDF2
M06921_2.00
Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW
Dap-seq
OMalley et al.(2016)
PDF2_col
0.821
0.860
ATML1
M10626_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ML1_01
0.821
0.860
PDF2
M10625_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PDF2_01
0.821
0.860
HDG9
M10628_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HDG9_01
0.813
0.684
HDG1
M06917_2.00
Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG1_col100_a
0.804
0.737
HDG1
M06918_2.00
Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG1_colamp_a
0.804
0.737
PK24181.1
M01252_2.00
Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN
PBM
Lambert et al.(2019)
pTH11300
0.799
0.737
ANL2
M02046_2.00
Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN
PBM
Weirauch et al.(2014)
pTH8244
0.788
0.772
ANL2
M06919_2.00
Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
ANL2_col_a
0.788
0.772
ANL2
M06920_2.00
Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
ANL2_colamp_a
0.788
0.772
HDG11
M02039_2.00
Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH
PBM
Weirauch et al.(2014)
pTH7664
0.783
0.702
HDG11
M06904_2.00
Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH
Dap-seq
OMalley et al.(2016)
EDT1_col
0.783
0.702
HDG7
M06931_2.00
Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG7_col_a
0.746
0.737
HDG7
M10629_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HDG7_01
0.746
0.737
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc10g005330.2.1
Homeodomain
59
115
KKQYHRHTQHQIQELESFFKECPHPDDKQRKDLGKRLGLEPLQVKFWFQNKRTQMKS
Links
Other
Homeodomain
family TFs
Other
Solanum lycopersicum
TFs
616 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_31908
Aegilops tauschii
F775_31908
N
0.000
Aquca_018_00218
Aquilegia coerulea
Aquca_018_00218
I
0.000
SPL2
Arabidopsis lyrata
scaffold_800740.1
N
0.000
SPL10
Arabidopsis lyrata
fgenesh2_kg.1__2893__AT1G27370.2
I
0.000
SPL11
Arabidopsis thaliana
AT1G27360
D
0.000
SPL10
Arabidopsis thaliana
AT1G27370
D
0.000
SPL2
Arabidopsis thaliana
AT5G43270
N
0.000
Bostr.3148s0148
Boechera stricta
Bostr.3148s0148
N
0.000
Bostr.15697s0062
Boechera stricta
Bostr.15697s0062
I
0.000
Bostr.15697s0063
Boechera stricta
Bostr.15697s0063
I
0.000
BRADI3G05510
Brachypodium distachyon
BRADI3G05510
I
0.000
Bo5g051970
Brassica oleracea
Bo5g051970
I
0.000
Bo5g051980
Brassica oleracea
Bo5g051980
I
0.000
Bo7g049940
Brassica oleracea
Bo7g049940
I
0.000
Bo7g049950
Brassica oleracea
Bo7g049950
I
0.000
Bo7g065290
Brassica oleracea
Bo7g065290
N
0.000
Bo9g058970
Brassica oleracea
Bo9g058970
N
0.000
Bra010949
Brassica rapa
Bra010949
I
0.000
Bra033671
Brassica rapa
Bra033671
N
0.000
Bra032823
Brassica rapa
Bra032823
I
0.000
Bra030041
Brassica rapa
Bra030041
I
0.000
Bra030040
Brassica rapa
Bra030040
I
0.000
Bra027478
Brassica rapa
Bra027478
N
0.000
PK16953.1
Cannabis sativa
PK16953.1
N
0.000
Cagra.8874s0007
Capsella grandiflora
Cagra.8874s0007
I
0.000
Cagra.8694s0002
Capsella grandiflora
Cagra.8694s0002
N
0.000
Cagra.8874s0008
Capsella grandiflora
Cagra.8874s0008
I
0.000
Carubv10026434m.g
Capsella rubella
Carubv10026434m.g
N
0.000
Carubv10009367m.g
Capsella rubella
Carubv10009367m.g
I
0.000
Carubv10009364m.g
Capsella rubella
Carubv10009364m.g
I
0.000
evm.TU.supercontig_43.66
Carica papaya
evm.TU.supercontig_43.66
I
0.000
Ca_11356
Cicer arietinum
Ca_11356
I
0.000
Ca_08506
Cicer arietinum
Ca_08506
I
0.000
Ciclev10031391m.g
Citrus clementina
Ciclev10031391m.g
N
0.000
orange1.1g011640m.g
Citrus sinensis
orange1.1g011640m.g
N
0.000
Eucgr.B03500
Eucalyptus grandis
Eucgr.B03500
I
0.000
Thhalv10003215m.g
Eutrema salsugineum
Thhalv10003215m.g
N
0.000
Thhalv10007832m.g
Eutrema salsugineum
Thhalv10007832m.g
I
0.000
GLYMA11G36980
Glycine max
GLYMA11G36980
N
0.000
GLYMA18G00903
Glycine max
GLYMA18G00903
N
0.000
Gorai.002G182700
Gossypium raimondii
Gorai.002G182700
N
0.000
Gorai.005G166500
Gossypium raimondii
Gorai.005G166500
N
0.000
MLOC_11199
Hordeum vulgare
MLOC_11199
N
0.000
MLOC_62426
Hordeum vulgare
MLOC_62426
N
0.000
LPERR02G04880
Leersia perrieri
LPERR02G04880
N
0.000
LPERR02G02980
Leersia perrieri
LPERR02G02980
N
0.000
LPERR06G22200
Leersia perrieri
LPERR06G22200
N
0.000
Lus10021614.g
Linum usitatissimum
Lus10021614.g
N
0.000
Lus10011356.g
Linum usitatissimum
Lus10011356.g
I
0.000
LjSGA_017270.1
Lotus japonicus
LjSGA_017270.1
N
0.000
LjSGA_032871.1
Lotus japonicus
LjSGA_032871.1
N
0.000
MDP0000249364
Malus domestica
MDP0000249364
N
0.000
MDP0000155354
Malus domestica
MDP0000155354
N
0.000
cassava12059.valid.m1
Manihot esculenta
cassava12059.valid.m1
N
0.000
cassava6540.valid.m1
Manihot esculenta
cassava6540.valid.m1
N
0.000
MTR_3g085180
Medicago truncatula
MTR_3g085180
N
0.000
mgf019346m
Mimulus guttatus
mgf019346m
I
0.000
mgf010397m
Mimulus guttatus
mgf010397m
N
0.000
GSMUA_Achr4G05720_001
Musa acuminata
GSMUA_Achr4G05720_001
N
0.000
GSMUA_Achr10G02970_001
Musa acuminata
GSMUA_Achr10G02970_001
N
0.000
GSMUA_Achr3G05360_001
Musa acuminata
GSMUA_Achr3G05360_001
N
0.000
GSMUA_Achr9G23140_001
Musa acuminata
GSMUA_Achr9G23140_001
I
0.000
GSMUA_Achr9G14160_001
Musa acuminata
GSMUA_Achr9G14160_001
N
0.000
GSMUA_Achr8G23820_001
Musa acuminata
GSMUA_Achr8G23820_001
N
0.000
GSMUA_Achr3G27750_001
Musa acuminata
GSMUA_Achr3G27750_001
N
0.000
GSMUA_Achr5G22630_001
Musa acuminata
GSMUA_Achr5G22630_001
N
0.000
GSMUA_Achr5G21990_001
Musa acuminata
GSMUA_Achr5G21990_001
N
0.000
GSMUA_Achr4G12470_001
Musa acuminata
GSMUA_Achr4G12470_001
I
0.000
GSMUA_Achr6G36010_001
Musa acuminata
GSMUA_Achr6G36010_001
N
0.000
OBART02G03260
Oryza barthii
OBART02G03260
N
0.000
OBART06G26610
Oryza barthii
OBART06G26610
N
0.000
OB02G12930
Oryza brachyantha
OB02G12930
N
0.000
OB02G14840
Oryza brachyantha
OB02G14840
N
0.000
ORGLA06G0222300
Oryza glaberrima
ORGLA06G0222300
N
0.000
ORGLA02G0051400
Oryza glaberrima
ORGLA02G0051400
N
0.000
ORGLA02G0030600
Oryza glaberrima
ORGLA02G0030600
N
0.000
OGLUM06G28030
Oryza glumaepatula
OGLUM06G28030
N
0.000
OGLUM02G05530
Oryza glumaepatula
OGLUM02G05530
N
0.000
SPL3
Oryza indica
BGIOSGA007499
N
0.000
BGIOSGA007643
Oryza indica
BGIOSGA007643
N
0.000
SPL12
Oryza indica
BGIOSGA020577
N
0.000
OLONG_025693
Oryza longistaminata
OLONG_025693
N
0.000
OLONG_012160
Oryza longistaminata
OLONG_012160
N
0.000
OMERI02G03900
Oryza meridionalis
OMERI02G03900
N
0.000
OMERI02G06420
Oryza meridionalis
OMERI02G06420
N
0.000
OMERI06G26720
Oryza meridionalis
OMERI06G26720
N
0.000
ONIVA06G29160
Oryza nivara
ONIVA06G29160
N
0.000
ONIVA02G03070
Oryza nivara
ONIVA02G03070
N
0.000
OPUNC06G24320
Oryza punctata
OPUNC06G24320
N
0.000
OPUNC02G02570
Oryza punctata
OPUNC02G02570
N
0.000
OPUNC02G04800
Oryza punctata
OPUNC02G04800
N
0.000
ORUFI02G05750
Oryza rufipogon
ORUFI02G05750
N
0.000
ORUFI06G28570
Oryza rufipogon
ORUFI06G28570
N
0.000
ORUFI02G03180
Oryza rufipogon
ORUFI02G03180
N
0.000
SPL4
Oryza sativa
OS02G0174100
N
0.000
SPL12
Oryza sativa
OS06G0703500
N
0.000
OS02G0139400
Oryza sativa
OS02G0139400
N
0.000
Pavir.J20730
Panicum virgatum
Pavir.J20730
N
0.000
Pavir.Ab00499
Panicum virgatum
Pavir.Ab00499
N
0.000
POPTR_0003s17120
Populus trichocarpa
POPTR_0003s17120
I
0.000
POPTR_0001s13890
Populus trichocarpa
POPTR_0001s13890
I
0.000
Pm007020
Prunus mume
Pm007020
N
0.000
PRUPE_ppa005013mg
Prunus persica
PRUPE_ppa005013mg
N
0.000
29929.m004641
Ricinus communis
29929.m004641
I
0.000
SapurV1A.0056s0240
Salix purpurea
SapurV1A.0056s0240
I
0.000
SapurV1A.1271s0060
Salix purpurea
SapurV1A.1271s0060
I
0.000
Si017749m.g
Setaria italica
Si017749m.g
N
0.000
Solyc05g015510.2
Solanum lycopersicum
Solyc05g015510.2
N
0.000
Solyc04g045560.2
Solanum lycopersicum
Solyc04g045560.2
N
0.000
PGSC0003DMG400034310
Solanum tuberosum
PGSC0003DMG400034310
N
0.000
PGSC0003DMG400026736
Solanum tuberosum
PGSC0003DMG400026736
I
0.000
Sb04g004940
Sorghum bicolor
Sb04g004940
N
0.000
TCM_008772
Theobroma cacao
TCM_008772
N
0.000
Traes_6AS_32A35158A
Triticum aestivum
Traes_6AS_32A35158A
N
0.000
Traes_6AS_99C6A3B0B
Triticum aestivum
Traes_6AS_99C6A3B0B
N
0.000
Traes_6BS_F50663DF7
Triticum aestivum
Traes_6BS_F50663DF7
N
0.000
Traes_6DS_7B1596298
Triticum aestivum
Traes_6DS_7B1596298
N
0.000
Traes_6DS_C4D93239C
Triticum aestivum
Traes_6DS_C4D93239C
N
0.000
TRIUR3_09477
Triticum urartu
TRIUR3_09477
N
0.000
VIT_01s0010g03710
Vitis vinifera
VIT_01s0010g03710
I
0.000
GRMZM2G126827
Zea mays
GRMZM2G126827
N
0.000
GRMZM2G065451
Zea mays
GRMZM2G065451
N
0.000
GRMZM2G156621
Zea mays
GRMZM2G156621
N
0.000
GRMZM2G163813
Zea mays
GRMZM2G163813
N
0.000
GRMZM2G097275
Zea mays
GRMZM2G097275
N
0.000