Solyc10g005330.2 (Solanum lycopersicum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Solyc10g005330.2 T223623_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.821 0.860
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.821 0.860
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.821 0.860
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.821 0.860
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.813 0.684
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.804 0.737
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.804 0.737
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.799 0.737
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.788 0.772
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.788 0.772
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.788 0.772
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.783 0.702
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.783 0.702
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.746 0.737
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.746 0.737
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc10g005330.2.1 Homeodomain 59 115

Links

Other Homeodomain family TFs
Other Solanum lycopersicum TFs

616 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_31908 Aegilops tauschii F775_31908 N 0.000
Aquca_018_00218 Aquilegia coerulea Aquca_018_00218 I 0.000
SPL2 Arabidopsis lyrata scaffold_800740.1 N 0.000
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.000
SPL11 Arabidopsis thaliana AT1G27360 D 0.000
SPL10 Arabidopsis thaliana AT1G27370 D 0.000
SPL2 Arabidopsis thaliana AT5G43270 N 0.000
Bostr.3148s0148 Boechera stricta Bostr.3148s0148 N 0.000
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.000
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.000
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I 0.000
Bo5g051970 Brassica oleracea Bo5g051970 I 0.000
Bo5g051980 Brassica oleracea Bo5g051980 I 0.000
Bo7g049940 Brassica oleracea Bo7g049940 I 0.000
Bo7g049950 Brassica oleracea Bo7g049950 I 0.000
Bo7g065290 Brassica oleracea Bo7g065290 N 0.000
Bo9g058970 Brassica oleracea Bo9g058970 N 0.000
Bra010949 Brassica rapa Bra010949 I 0.000
Bra033671 Brassica rapa Bra033671 N 0.000
Bra032823 Brassica rapa Bra032823 I 0.000
Bra030041 Brassica rapa Bra030041 I 0.000
Bra030040 Brassica rapa Bra030040 I 0.000
Bra027478 Brassica rapa Bra027478 N 0.000
PK16953.1 Cannabis sativa PK16953.1 N 0.000
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I 0.000
Cagra.8694s0002 Capsella grandiflora Cagra.8694s0002 N 0.000
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.000
Carubv10026434m.g Capsella rubella Carubv10026434m.g N 0.000
Carubv10009367m.g Capsella rubella Carubv10009367m.g I 0.000
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.000
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.000
Ca_11356 Cicer arietinum Ca_11356 I 0.000
Ca_08506 Cicer arietinum Ca_08506 I 0.000
Ciclev10031391m.g Citrus clementina Ciclev10031391m.g N 0.000
orange1.1g011640m.g Citrus sinensis orange1.1g011640m.g N 0.000
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.000
Thhalv10003215m.g Eutrema salsugineum Thhalv10003215m.g N 0.000
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.000
GLYMA11G36980 Glycine max GLYMA11G36980 N 0.000
GLYMA18G00903 Glycine max GLYMA18G00903 N 0.000
Gorai.002G182700 Gossypium raimondii Gorai.002G182700 N 0.000
Gorai.005G166500 Gossypium raimondii Gorai.005G166500 N 0.000
MLOC_11199 Hordeum vulgare MLOC_11199 N 0.000
MLOC_62426 Hordeum vulgare MLOC_62426 N 0.000
LPERR02G04880 Leersia perrieri LPERR02G04880 N 0.000
LPERR02G02980 Leersia perrieri LPERR02G02980 N 0.000
LPERR06G22200 Leersia perrieri LPERR06G22200 N 0.000
Lus10021614.g Linum usitatissimum Lus10021614.g N 0.000
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.000
LjSGA_017270.1 Lotus japonicus LjSGA_017270.1 N 0.000
LjSGA_032871.1 Lotus japonicus LjSGA_032871.1 N 0.000
MDP0000249364 Malus domestica MDP0000249364 N 0.000
MDP0000155354 Malus domestica MDP0000155354 N 0.000
cassava12059.valid.m1 Manihot esculenta cassava12059.valid.m1 N 0.000
cassava6540.valid.m1 Manihot esculenta cassava6540.valid.m1 N 0.000
MTR_3g085180 Medicago truncatula MTR_3g085180 N 0.000
mgf019346m Mimulus guttatus mgf019346m I 0.000
mgf010397m Mimulus guttatus mgf010397m N 0.000
GSMUA_Achr4G05720_001 Musa acuminata GSMUA_Achr4G05720_001 N 0.000
GSMUA_Achr10G02970_001 Musa acuminata GSMUA_Achr10G02970_001 N 0.000
GSMUA_Achr3G05360_001 Musa acuminata GSMUA_Achr3G05360_001 N 0.000
GSMUA_Achr9G23140_001 Musa acuminata GSMUA_Achr9G23140_001 I 0.000
GSMUA_Achr9G14160_001 Musa acuminata GSMUA_Achr9G14160_001 N 0.000
GSMUA_Achr8G23820_001 Musa acuminata GSMUA_Achr8G23820_001 N 0.000
GSMUA_Achr3G27750_001 Musa acuminata GSMUA_Achr3G27750_001 N 0.000
GSMUA_Achr5G22630_001 Musa acuminata GSMUA_Achr5G22630_001 N 0.000
GSMUA_Achr5G21990_001 Musa acuminata GSMUA_Achr5G21990_001 N 0.000
GSMUA_Achr4G12470_001 Musa acuminata GSMUA_Achr4G12470_001 I 0.000
GSMUA_Achr6G36010_001 Musa acuminata GSMUA_Achr6G36010_001 N 0.000
OBART02G03260 Oryza barthii OBART02G03260 N 0.000
OBART06G26610 Oryza barthii OBART06G26610 N 0.000
OB02G12930 Oryza brachyantha OB02G12930 N 0.000
OB02G14840 Oryza brachyantha OB02G14840 N 0.000
ORGLA06G0222300 Oryza glaberrima ORGLA06G0222300 N 0.000
ORGLA02G0051400 Oryza glaberrima ORGLA02G0051400 N 0.000
ORGLA02G0030600 Oryza glaberrima ORGLA02G0030600 N 0.000
OGLUM06G28030 Oryza glumaepatula OGLUM06G28030 N 0.000
OGLUM02G05530 Oryza glumaepatula OGLUM02G05530 N 0.000
SPL3 Oryza indica BGIOSGA007499 N 0.000
BGIOSGA007643 Oryza indica BGIOSGA007643 N 0.000
SPL12 Oryza indica BGIOSGA020577 N 0.000
OLONG_025693 Oryza longistaminata OLONG_025693 N 0.000
OLONG_012160 Oryza longistaminata OLONG_012160 N 0.000
OMERI02G03900 Oryza meridionalis OMERI02G03900 N 0.000
OMERI02G06420 Oryza meridionalis OMERI02G06420 N 0.000
OMERI06G26720 Oryza meridionalis OMERI06G26720 N 0.000
ONIVA06G29160 Oryza nivara ONIVA06G29160 N 0.000
ONIVA02G03070 Oryza nivara ONIVA02G03070 N 0.000
OPUNC06G24320 Oryza punctata OPUNC06G24320 N 0.000
OPUNC02G02570 Oryza punctata OPUNC02G02570 N 0.000
OPUNC02G04800 Oryza punctata OPUNC02G04800 N 0.000
ORUFI02G05750 Oryza rufipogon ORUFI02G05750 N 0.000
ORUFI06G28570 Oryza rufipogon ORUFI06G28570 N 0.000
ORUFI02G03180 Oryza rufipogon ORUFI02G03180 N 0.000
SPL4 Oryza sativa OS02G0174100 N 0.000
SPL12 Oryza sativa OS06G0703500 N 0.000
OS02G0139400 Oryza sativa OS02G0139400 N 0.000
Pavir.J20730 Panicum virgatum Pavir.J20730 N 0.000
Pavir.Ab00499 Panicum virgatum Pavir.Ab00499 N 0.000
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.000
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.000
Pm007020 Prunus mume Pm007020 N 0.000
PRUPE_ppa005013mg Prunus persica PRUPE_ppa005013mg N 0.000
29929.m004641 Ricinus communis 29929.m004641 I 0.000
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.000
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.000
Si017749m.g Setaria italica Si017749m.g N 0.000
Solyc05g015510.2 Solanum lycopersicum Solyc05g015510.2 N 0.000
Solyc04g045560.2 Solanum lycopersicum Solyc04g045560.2 N 0.000
PGSC0003DMG400034310 Solanum tuberosum PGSC0003DMG400034310 N 0.000
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I 0.000
Sb04g004940 Sorghum bicolor Sb04g004940 N 0.000
TCM_008772 Theobroma cacao TCM_008772 N 0.000
Traes_6AS_32A35158A Triticum aestivum Traes_6AS_32A35158A N 0.000
Traes_6AS_99C6A3B0B Triticum aestivum Traes_6AS_99C6A3B0B N 0.000
Traes_6BS_F50663DF7 Triticum aestivum Traes_6BS_F50663DF7 N 0.000
Traes_6DS_7B1596298 Triticum aestivum Traes_6DS_7B1596298 N 0.000
Traes_6DS_C4D93239C Triticum aestivum Traes_6DS_C4D93239C N 0.000
TRIUR3_09477 Triticum urartu TRIUR3_09477 N 0.000
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.000
GRMZM2G126827 Zea mays GRMZM2G126827 N 0.000
GRMZM2G065451 Zea mays GRMZM2G065451 N 0.000
GRMZM2G156621 Zea mays GRMZM2G156621 N 0.000
GRMZM2G163813 Zea mays GRMZM2G163813 N 0.000
GRMZM2G097275 Zea mays GRMZM2G097275 N 0.000