CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
SPU_011798
(
Strongylocentrotus purpuratus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
SPU_011798
T223700_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hoxc12
M00508_2.00
Mus musculus
NDTWAYNDBN
NVHNRTWAHN
PBM
Berger et al.(2008)
Hoxc12_3480
0.690
0.596
HOXC12
M03135_2.00
Homo sapiens
TTTTATTRY
RYAATAAAA
SELEX
Jolma et al.(2013)
HOXC12_1
0.690
0.596
HOXC12
M03136_2.00
Homo sapiens
RRTCGTAAAAH
DTTTTACGAYY
SELEX
Jolma et al.(2013)
HOXC12_2
0.690
0.596
HOXC12
M05083_2.00
Homo sapiens
NGYAATAAAAN
NTTTTATTRCN
SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_1
0.690
0.596
HOXC12
M05084_2.00
Homo sapiens
VRTCGTAAAHN
NDTTTACGAYB
SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_2
0.690
0.596
HOXC12
M05085_2.00
Homo sapiens
NGYAATAAAAH
DTTTTATTRCN
SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_1
0.690
0.596
HOXC12
M05086_2.00
Homo sapiens
NRTCGTAAAHH
DDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_2
0.690
0.596
Hoxd12_CONSTRUCT
M00538_2.00
PBM CONSTRUCTS
NWTWAYNDBN
NVHNRTWAWN
PBM
Berger et al.(2008)
Hoxd12_3481
0.645
0.526
HXD12_HETFR
M02196_2.00
Heterodontus francisci
TTWATKRC
GYMATWAA
PBM
Weirauch et al.(2014)
pTH6533
0.645
0.526
HOXD12
M03206_2.00
Homo sapiens
SYAATAAAA
TTTTATTRS
SELEX
Jolma et al.(2013)
HOXD12_1
0.645
0.526
HOXD12
M03207_2.00
Homo sapiens
RVTCGTAAAAH
DTTTTACGABY
SELEX
Jolma et al.(2013)
HOXD12_2
0.645
0.526
HOXD12
M03208_2.00
Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN
SELEX
Jolma et al.(2013)
HOXD12_3
0.645
0.526
HOXD12
M03209_2.00
Homo sapiens
DTTWATYRC
GYRATWAAH
SELEX
Jolma et al.(2013)
HOXD12_4
0.645
0.526
HOXD12
M05279_2.00
Homo sapiens
NKTWACGAYN
NRTCGTWAMN
SELEX
Yin et al.(2017)
HOXD12_eDBD_HT-SELEX
0.645
0.526
HOXD12
M05280_2.00
Homo sapiens
NRTCGTAAAH
DTTTACGAYN
SELEX
Yin et al.(2017)
HOXD12_eDBD_Methyl-HT-SELEX
0.645
0.526
Abd-B
M00554_2.00
Drosophila melanogaster
NWTWAYDDNN
NNHHRTWAWN
PBM
Busser et al.(2012a)
Abd-B
0.638
0.561
Abd-B
M03772_2.00
Drosophila melanogaster
DRTCRTAAAWH
DWTTTAYGAYH
SELEX
Nitta et al.(2015)
Abd-B_1
0.638
0.561
Abd-B
M03773_2.00
Drosophila melanogaster
DTTTTATKRCY
RGYMATAAAAH
SELEX
Nitta et al.(2015)
Abd-B_2
0.638
0.561
Abd-B
M03774_2.00
Drosophila melanogaster
NKCARYAACGACYW
WRGTCGTTRYTGMN
SELEX
Nitta et al.(2015)
Abd-B_3
0.638
0.561
Abd-B
M03775_2.00
Drosophila melanogaster
DTTTWATGKSTTTY
RAAASMCATWAAAH
SELEX
Nitta et al.(2015)
Abd-B_4
0.638
0.561
Abd-B
M06476_2.00
Drosophila melanogaster
TTTATKR
YMATAAA
B1H
Mathelier et al.(2014)
MA0165.1
0.638
0.561
Abd-B
M06211_2.00
Drosophila melanogaster
YCATAAAA
TTTTATGR
B1H
Zhu et al.(2011)
Abd-B_FlyReg_FBgn0000015
0.638
0.561
Abd-B
M09672_2.00
Drosophila melanogaster
YMATAAAAHH
DDTTTTATKR
Misc
Kulakovskiy et al.(2009)
Abd-B
0.638
0.561
Abd-B
M10779_2.00
Drosophila melanogaster
VSNTTDATKRCNNN
NNNGYMATHAANSB
Transfac
Matys et al.(2006)
I$ABDB_01
0.638
0.561
Abd-B
M10780_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$ABDB_Q6
0.638
0.561
NEMVEDRAFT_v1g105595
M02143_2.00
Nematostella vectensis
NTWATWRN
NYWATWAN
PBM
Weirauch et al.(2014)
pTH5503
0.616
0.439
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SPU_011798-tr
Homeodomain
167
223
RAKRKPYSKLQLIHLEDEFKRSMYPCRERRAWLSQVLELTERQVKIWFQNRRTKLRR
Links
Other
Homeodomain
family TFs
Other
Strongylocentrotus purpuratus
TFs
257 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy