TC000361 (Tribolium castaneum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 TC000361 T223794_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Six3
M00483_2.00
Mus musculus
NNNAYMN

NKRTNNN
PBM
Berger et al.(2008)
Six3_1732
0.867 0.982
SIX3
M05159_2.00
Homo sapiens
NNYGATABBN

NVVTATCRNN
SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX
0.867 0.982
SIX3
M10698_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX3_Q6
0.867 0.982
SIX3
M05160_2.00
Homo sapiens
NNYGATABVB

VBVTATCRNN
SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX
0.867 0.982
Optix
M02124_2.00
Drosophila melanogaster
NNNNNDATMN

NKATHNNNNN
PBM
Weirauch et al.(2014)
pTH5437
0.867 0.965
Optix
M03850_2.00
Drosophila melanogaster
TAATYTAATTA

TAATTARATTA
SELEX
Nitta et al.(2015)
Optix_1
0.867 0.965
Optix
M06526_2.00
Drosophila melanogaster
TGATA

TATCA
B1H
Mathelier et al.(2014)
MA0199.1
0.867 0.965
Optix
M06327_2.00
Drosophila melanogaster
HHVTGATA

TATCABDD
B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360
0.867 0.965
Optix
M06328_2.00
Drosophila melanogaster
NNNTGATA

TATCANNN
B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360
0.867 0.965
SIX6
M00326_2.00
Homo sapiens
NNDATMB

VKATHNN
PBM
Barrera et al.(2016)
SIX6_REF
0.865 0.965
Six6
M00169_2.00
Mus musculus
NNAYMNN

NNKRTNN
PBM
Badis et al.(2009)
Six6_2267
0.865 0.965
Six6
M00412_2.00
Mus musculus
NNNTGATAYCN

NGRTATCANNN
PBM
Berger et al.(2008)
Six6_2267
0.865 0.965
SIX6
M05357_2.00
Homo sapiens
NNYGATASVB

VBSTATCRNN
SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX
0.865 0.965
SIX6
M00325_2.00
Homo sapiens
NNNDATMB

VKATHNNN
PBM
Barrera et al.(2016)
SIX6_H141N
0.865 0.965
SIX6
M05358_2.00
Homo sapiens
VBVYAYCRNN

NNYGRTRBVB
SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX
0.865 0.965
six3
M02102_2.00
Oryzias latipes
NNDAYMBNNN

NNNVKRTHNN
PBM
Weirauch et al.(2014)
pTH5928
0.865 0.947
SIX6
M00327_2.00
Homo sapiens
NHDAYMBNN

NNVKRTHDN
PBM
Barrera et al.(2016)
SIX6_T165A
0.859 0.947
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TC000361-PA Homeodomain 171 227

Links

Other Homeodomain family TFs
Other Tribolium castaneum TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30147.m014147 Ricinus communis 30147.m014147 N 0.000
Aquca_035_00249 Aquilegia coerulea Aquca_035_00249 N 0.000
AT4G25400 Arabidopsis thaliana AT4G25400 D 0.000
AT5G51780 Arabidopsis thaliana AT5G51780 I 0.000
Bo7g110280 Brassica oleracea Bo7g110280 I 0.000
Bostr.15774s0324 Boechera stricta Bostr.15774s0324 I 0.000
Bostr.7867s0349 Boechera stricta Bostr.7867s0349 I 0.000
Bra019167 Brassica rapa Bra019167 I 0.000
Bra022562 Brassica rapa Bra022562 I 0.000
Cagra.0277s0021 Capsella grandiflora Cagra.0277s0021 I 0.000
Cagra.0568s0165 Capsella grandiflora Cagra.0568s0165 N 0.000
Carubv10011792m.g Capsella rubella Carubv10011792m.g N 0.000
Carubv10027166m.g Capsella rubella Carubv10027166m.g I 0.000
cassava21379.m1 Manihot esculenta cassava21379.m1 I 0.000
cassava43207.valid.m1 Manihot esculenta cassava43207.valid.m1 I 0.000
cassava45968.m1 Manihot esculenta cassava45968.m1 I 0.000
Ca_22233 Cicer arietinum Ca_22233 I 0.000
Ciclev10006628m.g Citrus clementina Ciclev10006628m.g I 0.000
Cucsa.302590 Cucumis sativus Cucsa.302590 N 0.000
Eucgr.E00512 Eucalyptus grandis Eucgr.E00512 N 0.000
fgenesh2_kg.8__1059__AT5G51780.1 Arabidopsis lyrata fgenesh2_kg.8__1059__AT5G51780.1 I 0.000
gene13365-v1.0-hybrid Fragaria vesca gene13365-v1.0-hybrid N 0.000
gene32346-v1.0-hybrid Fragaria vesca gene32346-v1.0-hybrid N 0.000
GLYMA09G27610 Glycine max GLYMA09G27610 I 0.000
GLYMA09G27630 Glycine max GLYMA09G27630 N 0.000
GLYMA16G32610 Glycine max GLYMA16G32610 I 0.000
GLYMA16G32620 Glycine max GLYMA16G32620 N 0.000
Gorai.006G196500 Gossypium raimondii Gorai.006G196500 I 0.000
Gorai.008G282300 Gossypium raimondii Gorai.008G282300 I 0.000
LjSGA_023375.1 Lotus japonicus LjSGA_023375.1 I 0.000
Lus10027394.g Linum usitatissimum Lus10027394.g N 0.000
MDP0000246258 Malus domestica MDP0000246258 I 0.000
MTR_0007s0380 Medicago truncatula MTR_0007s0380 N 0.000
MTR_1g102370 Medicago truncatula MTR_1g102370 N 0.000
orange1.1g036406m.g Citrus sinensis orange1.1g036406m.g I 0.000
PK11667.1 Cannabis sativa PK11667.1 I 0.000
PK15358.1 Cannabis sativa PK15358.1 I 0.000
Pm019419 Prunus mume Pm019419 I 0.000
POPTR_0012s14080 Populus trichocarpa POPTR_0012s14080 I 0.000
Solyc06g035490.2 Solanum lycopersicum Solyc06g035490.2 I 0.000
TCM_016133 Theobroma cacao TCM_016133 I 0.000
Thhalv10009922m.g Eutrema salsugineum Thhalv10009922m.g I 0.000
Thhalv10026341m.g Eutrema salsugineum Thhalv10026341m.g I 0.000