TCM_031644 (Theobroma cacao)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 TCM_031644 T223929_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.722 0.667
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.722 0.667
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD

HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.722 0.632
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD

HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.722 0.632
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN

NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.626 0.474
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD

HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.626 0.474
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA

TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.626 0.474
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN

NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
0.623 0.456
ATHB-12
M00865_2.00
Arabidopsis thaliana
NNNNNNNN

NNNNNNNN
PBM
Franco-Zorrilla et al.(2014)
ATHB12
0.600 0.544
ATHB-12
M02045_2.00
Arabidopsis thaliana
BHWWWWWWDV

BHWWWWWWDV
PBM
Weirauch et al.(2014)
pTH7207
0.600 0.544
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY13116 Homeodomain 12 68

Links

Other Homeodomain family TFs
Other Theobroma cacao TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.833
MDP0000909160 Malus domestica MDP0000909160 I 0.825
MDP0000146339 Malus domestica MDP0000146339 I 0.806
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.806
Pm011328 Prunus mume Pm011328 I 0.804
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.804
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.794
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.794
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.794
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.789
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.789
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.783
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.777
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.774
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.771
mgf013301m Mimulus guttatus mgf013301m I 0.771
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.767
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.754
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.752
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.748
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.742
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.742
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.731
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.731
mgf025174m Mimulus guttatus mgf025174m I 0.729
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.723
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.723
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.723
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.723
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.723
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.723
Bra006285 Brassica rapa Bra006285 I 0.723
Bra023506 Brassica rapa Bra023506 I 0.723
Bo2g012410 Brassica oleracea Bo2g012410 I 0.723
Bo3g010120 Brassica oleracea Bo3g010120 I 0.723
HAT7 Arabidopsis thaliana AT5G15150 I 0.723
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.723
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.722
Cla010510 Citrullus lanatus Cla010510 I 0.722
Ca_10527 Cicer arietinum Ca_10527 I 0.722
TCM_018470 Theobroma cacao TCM_018470 I 0.722
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.722
PK20392.1 Cannabis sativa PK20392.1 D 0.722
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.722
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.722
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.722
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.722
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.722
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.722
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.722
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.722
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.722
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.722
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.722
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.722
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.722
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.722
MDP0000737128 Malus domestica MDP0000737128 I 0.722
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.722
MDP0000124827 Malus domestica MDP0000124827 I 0.722
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.722
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.722
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.722
Pm015861 Prunus mume Pm015861 I 0.722
29822.m003500 Ricinus communis 29822.m003500 I 0.722
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.722
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.722
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.722
Bra039135 Brassica rapa Bra039135 I 0.722
Bra008717 Brassica rapa Bra008717 I 0.722
Bo1g158730 Brassica oleracea Bo1g158730 I 0.722
Bo9g165360 Brassica oleracea Bo9g165360 I 0.722
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.722
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.722
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.717
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.717
29983.m003123 Ricinus communis 29983.m003123 I 0.712
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.712
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.712
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.712
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.709
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.707
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.706
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.702
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.700
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.700
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.699
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.699
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.699
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.693
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.689
Bo12274s010 Brassica oleracea Bo12274s010 I 0.688
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.687
Bo2g042250 Brassica oleracea Bo2g042250 I 0.682
Bra022687 Brassica rapa Bra022687 I 0.682
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.675
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.675
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.673
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.673
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.673
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.673
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.673
Si030983m.g Setaria italica Si030983m.g I 0.673
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.673
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.669
Pm018314 Prunus mume Pm018314 I 0.669
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.667
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.661
Cla018641 Citrullus lanatus Cla018641 I 0.661
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.659
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.658
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.646
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.637
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.637
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.637
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.637
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.637
mgf022748m Mimulus guttatus mgf022748m I 0.637
MDP0000119544 Malus domestica MDP0000119544 I 0.635
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.635
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.635
MDP0000311522 Malus domestica MDP0000311522 I 0.635
TCM_022391 Theobroma cacao TCM_022391 I 0.635
MDP0000134241 Malus domestica MDP0000134241 I 0.635
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.635
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.635
MDP0000738604 Malus domestica MDP0000738604 I 0.635
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.635
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.635
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.635
Cla018017 Citrullus lanatus Cla018017 I 0.635
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.635
Pm026270 Prunus mume Pm026270 I 0.635
29815.m000499 Ricinus communis 29815.m000499 I 0.635
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.635
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.635
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.635
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.635
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.635
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.635
mgf019824m Mimulus guttatus mgf019824m I 0.635
PK15535.1 Cannabis sativa PK15535.1 I 0.635
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.635
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I 0.633
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.633
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.633
cassava46810.m1 Manihot esculenta cassava46810.m1 I 0.633
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.631
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.629
Ciclev10016895m.g Citrus clementina Ciclev10016895m.g I 0.627
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.626
Bo3g002560 Brassica oleracea Bo3g002560 I 0.626
Bo2g005230 Brassica oleracea Bo2g005230 I 0.626
Bo9g181720 Brassica oleracea Bo9g181720 I 0.626
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.626
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.626
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.626
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.626
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.626
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.626
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.626
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.626
Bra028820 Brassica rapa Bra028820 I 0.626
Bra009510 Brassica rapa Bra009510 I 0.626
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.623
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.623
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.623
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.623
Bo4g034490 Brassica oleracea Bo4g034490 I 0.623
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.623
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.623
Bra005259 Brassica rapa Bra005259 I 0.623
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.616
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.613
Bra018155 Brassica rapa Bra018155 I 0.612
evm.TU.supercontig_83.103 Carica papaya evm.TU.supercontig_83.103 N 0.610
SapurV1A.0118s0340 Salix purpurea SapurV1A.0118s0340 N 0.603
Aquca_036_00050 Aquilegia coerulea Aquca_036_00050 N 0.601
Bostr.13158s0194 Boechera stricta Bostr.13158s0194 I 0.600
MLOC_66350 Hordeum vulgare MLOC_66350 I 0.600
LPERR02G21210 Leersia perrieri LPERR02G21210 I 0.600
Cagra.0483s0055 Capsella grandiflora Cagra.0483s0055 I 0.600
ATHB-12 Arabidopsis lyrata fgenesh2_kg.5__2686__AT3G61890.1 I 0.600
Bo8g097390 Brassica oleracea Bo8g097390 I 0.600
Bra007637 Brassica rapa Bra007637 I 0.600
ATHB-12 Arabidopsis thaliana AT3G61890 D 0.600
Carubv10017952m.g Capsella rubella Carubv10017952m.g I 0.600