Traes_4BL_BE10705D5 (Triticum aestivum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Traes_4BL_BE10705D5 T224204_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATHB-5
M06932_2.00
Arabidopsis thaliana
NYAATMATTND

HNAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_col_a
0.688 0.614
ATHB-5
M06933_2.00
Arabidopsis thaliana
NYAATMATTN

NAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a
0.688 0.614
ATHB-5
M02684_2.00
Arabidopsis thaliana
CAATVATTGVVSV

BSBBCAATBATTG
SELEX
Mathelier et al.(2014)
MA0110.2
0.688 0.614
ATHB-5
M10630_2.00
Arabidopsis thaliana
CAATVATTG

CAATBATTG
Transfac
Matys et al.(2006)
P$ATHB5_01
0.688 0.614
estExt_gwp_gw1.C_70211
M02220_2.00
Physcomitrella patens
HMATNANDNN

NNHNTNATKD
PBM
Weirauch et al.(2014)
pTH8489
0.674 0.649
ATHB-6
M02040_2.00
Arabidopsis thaliana
HATNATTDN

NHAATNATD
PBM
Weirauch et al.(2014)
pTH7670
0.674 0.632
ATHB-6
M06909_2.00
Arabidopsis thaliana
NNNHATKATTR

YAATMATDNNN
Dap-seq
OMalley et al.(2016)
ATHB6_col_a
0.674 0.632
ATHB-6
M06910_2.00
Arabidopsis thaliana
NCAATAATTRN

NYAATTATTGN
Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a
0.674 0.632
ATHB-16
M02050_2.00
Arabidopsis thaliana
YAATMATT

AATKATTR
PBM
Weirauch et al.(2014)
pTH7270
0.674 0.596
HAT5
M06914_2.00
Arabidopsis thaliana
NHAATAATTDW

WHAATTATTDN
Dap-seq
OMalley et al.(2016)
HAT5_col_a
0.662 0.632
HAT5
M06915_2.00
Arabidopsis thaliana
WNYAATAATTRWDN

NHWYAATTATTRNW
Dap-seq
OMalley et al.(2016)
HAT5_colamp_a
0.662 0.632
HAT5
M02683_2.00
Arabidopsis thaliana
SCAATAATTNNV

BNNAATTATTGS
SELEX
Mathelier et al.(2014)
MA0008.2
0.662 0.632
HAT5
M10624_2.00
Arabidopsis thaliana
YSCAATAATTNNVN

NBNNAATTATTGSR
Transfac
Matys et al.(2006)
P$ATHB1_01
0.662 0.632
HB-5
M06924_2.00
Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH

DWWDNNNHMAATWATTGDTNN
Dap-seq
OMalley et al.(2016)
ATHB40_col_a
0.657 0.667
HB-5
M06925_2.00
Arabidopsis thaliana
HHAATWATTGDWNN

NNWHCAATWATTDD
Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a
0.657 0.667
ATHB-21
M06907_2.00
Arabidopsis thaliana
NNWHCAATWATTDN

NHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB21_col_a
0.657 0.632
ATHB-21
M06908_2.00
Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN

NNAHCAATWATTDNNNHHWW
Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a
0.657 0.632
ATHB-53
M06934_2.00
Arabidopsis thaliana
HMAATAATTRD

HYAATTATTKD
Dap-seq
OMalley et al.(2016)
ATHB53_col_a
0.652 0.614
ATHB-53
M06935_2.00
Arabidopsis thaliana
NNWHCAATWATTDDN

NHHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a
0.652 0.614
ATHB-13
M06900_2.00
Arabidopsis thaliana
HYAATAATTDD

HHAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB13_col_a
0.644 0.561
ATHB-13
M06901_2.00
Arabidopsis thaliana
NYAATAATTRW

WYAATTATTRN
Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a
0.644 0.561
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Traes_4BL_BE10705D5.2 Homeodomain 60 116

Links

Other Homeodomain family TFs
Other Triticum aestivum TFs

716 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action