CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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VDAG_03007
(
Verticillium dahliae
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
VDAG_03007
T224474_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NCU03266
M02224_2.00
Neurospora crassa
NNBWWAKDRN
NYHMTWWVNN
PBM
Weirauch et al.(2014)
pTH8814
0.860
0.842
FGRRES_01100
M02131_2.00
Fusarium graminearum
WTTAATTR
YAATTAAW
PBM
Weirauch et al.(2014)
pTH5438
0.796
0.842
ATEG_04171
M02059_2.00
Aspergillus terreus
BWWATKRNNN
NNNYMATWWV
PBM
Weirauch et al.(2014)
pTH5871
0.610
0.737
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EGY21567
Homeodomain
77
133
KGKRKRTAAKDKTILEEAYQTNPKPDKTARHDIVQRVSLTEKEVQIWFQNRRQNDRR
Links
Other
Homeodomain
family TFs
Other
Verticillium dahliae
TFs
98 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
LjSGA_144865.1
Lotus japonicus
LjSGA_144865.1
I
0.000
Pavir.J37640
Panicum virgatum
Pavir.J37640
I
0.000
Pavir.J03524
Panicum virgatum
Pavir.J03524
I
0.000
Eucgr.F04380
Eucalyptus grandis
Eucgr.F04380
I
0.000
Thhalv10018331m.g
Eutrema salsugineum
Thhalv10018331m.g
N
0.000
Traes_2AL_C70217249
Triticum aestivum
Traes_2AL_C70217249
N
0.000
Solyc11g013480.1
Solanum lycopersicum
Solyc11g013480.1
N
0.000
Si021833m.g
Setaria italica
Si021833m.g
N
0.000
PGSC0003DMG400027798
Solanum tuberosum
PGSC0003DMG400027798
N
0.000
OPUNC04G28180
Oryza punctata
OPUNC04G28180
N
0.000
OB04G37650
Oryza brachyantha
OB04G37650
N
0.000
GRMZM5G808366
Zea mays
GRMZM5G808366
N
0.000
GRMZM2G023813
Zea mays
GRMZM2G023813
N
0.000
GLYMA04G43350
Glycine max
GLYMA04G43350
N
0.000
BRADI5G27400
Brachypodium distachyon
BRADI5G27400
N
0.000
Bra003665
Brassica rapa
Bra003665
N
0.000
Bo6g081980
Brassica oleracea
Bo6g081980
N
0.000