VIT_16s0098g01170 (Vitis vinifera)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 VIT_16s0098g01170 T224569_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.726 0.596
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.726 0.596
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.706 0.596
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.706 0.596
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.652 0.491
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.652 0.491
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.652 0.491
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.639 0.474
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.631 0.702
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.631 0.702
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_16s0098g01170.t01 Homeodomain 23 79

Links

Other Homeodomain family TFs
Other Vitis vinifera TFs

223 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.775
Pm018314 Prunus mume Pm018314 I 0.751
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.751
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.740
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.739
Bra039135 Brassica rapa Bra039135 I 0.726
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.726
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.726
Bo1g158730 Brassica oleracea Bo1g158730 I 0.726
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.726
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.726
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.726
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.726
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.720
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.716
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.713
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.713
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.713
Pm011328 Prunus mume Pm011328 I 0.713
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.712
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.712
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.712
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.712
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.712
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.712
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.712
Si030983m.g Setaria italica Si030983m.g I 0.712
MDP0000146339 Malus domestica MDP0000146339 I 0.711
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.709
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.709
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.709
TCM_031644 Theobroma cacao TCM_031644 I 0.709
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.709
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.706
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.706
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.706
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.706
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.706
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.706
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.706
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.706
Ca_10527 Cicer arietinum Ca_10527 I 0.706
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.706
29822.m003500 Ricinus communis 29822.m003500 I 0.706
Cla010510 Citrullus lanatus Cla010510 I 0.706
Pm015861 Prunus mume Pm015861 I 0.706
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.706
TCM_018470 Theobroma cacao TCM_018470 I 0.706
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.706
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.706
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.706
MDP0000124827 Malus domestica MDP0000124827 I 0.706
PK20392.1 Cannabis sativa PK20392.1 D 0.706
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.706
HAT7 Arabidopsis thaliana AT5G15150 I 0.706
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.706
MDP0000737128 Malus domestica MDP0000737128 I 0.706
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.706
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.706
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.706
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.706
Bra006285 Brassica rapa Bra006285 I 0.706
Bra023506 Brassica rapa Bra023506 I 0.706
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.706
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.706
Bra008717 Brassica rapa Bra008717 I 0.706
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.706
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.706
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.706
Bo9g165360 Brassica oleracea Bo9g165360 I 0.706
Bo3g010120 Brassica oleracea Bo3g010120 I 0.706
Bo2g012410 Brassica oleracea Bo2g012410 I 0.706
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.706
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.705
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.705
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.705
MDP0000909160 Malus domestica MDP0000909160 I 0.703
mgf013301m Mimulus guttatus mgf013301m I 0.700
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.700
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.700
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.699
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.694
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.692
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.690
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.690
MDP0000311522 Malus domestica MDP0000311522 I 0.687
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.681
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.680
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.676
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.676
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.676
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.676
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.672
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.670
Bo12274s010 Brassica oleracea Bo12274s010 I 0.670
mgf025174m Mimulus guttatus mgf025174m I 0.667
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.665
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.662
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.662
Bra022687 Brassica rapa Bra022687 I 0.659
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.659
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.659
Bo2g042250 Brassica oleracea Bo2g042250 I 0.659
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.659
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.659
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.659
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.659
Thhalv10006221m.g Eutrema salsugineum Thhalv10006221m.g I 0.658
mgf022748m Mimulus guttatus mgf022748m I 0.654
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.654
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.654
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.654
MDP0000134241 Malus domestica MDP0000134241 I 0.653
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.652
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.652
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.652
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.652
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.652
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.652
MDP0000738604 Malus domestica MDP0000738604 I 0.652
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.652
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.652
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.652
MDP0000119544 Malus domestica MDP0000119544 I 0.652
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.652
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.652
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.652
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.652
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.652
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.652
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.652
Cla018017 Citrullus lanatus Cla018017 I 0.652
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.652
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.652
TCM_022391 Theobroma cacao TCM_022391 I 0.652
Cla018641 Citrullus lanatus Cla018641 I 0.652
Pm026270 Prunus mume Pm026270 I 0.652
Bo3g002560 Brassica oleracea Bo3g002560 I 0.652
mgf019824m Mimulus guttatus mgf019824m I 0.652
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.652
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.652
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.652
Bra009510 Brassica rapa Bra009510 I 0.652
Bo9g181720 Brassica oleracea Bo9g181720 I 0.652
29815.m000499 Ricinus communis 29815.m000499 I 0.652
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.652
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.652
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.652
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.652
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.652
PDK_20s1318331g001 Phoenix dactylifera PDK_20s1318331g001 I 0.647
29983.m003123 Ricinus communis 29983.m003123 I 0.640
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.640
Bra028820 Brassica rapa Bra028820 I 0.640
PK15535.1 Cannabis sativa PK15535.1 I 0.640
Bo2g005230 Brassica oleracea Bo2g005230 I 0.640
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.639
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.639
Bo4g034490 Brassica oleracea Bo4g034490 I 0.639
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.639
Bra005259 Brassica rapa Bra005259 I 0.639
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.639
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.639
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.639
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.639
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.639
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.634
MDP0000316497 Malus domestica MDP0000316497 I 0.634
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.634
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.634
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.634
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.634
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.633
ATHB-12 Arabidopsis thaliana AT3G61890 D 0.631
Cagra.0483s0055 Capsella grandiflora Cagra.0483s0055 I 0.631
Bostr.13158s0194 Boechera stricta Bostr.13158s0194 I 0.631
Bo8g097390 Brassica oleracea Bo8g097390 I 0.631
Bra007637 Brassica rapa Bra007637 I 0.631
ATHB-12 Arabidopsis lyrata fgenesh2_kg.5__2686__AT3G61890.1 I 0.631
Carubv10017952m.g Capsella rubella Carubv10017952m.g I 0.631
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.628
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I 0.627
Ca_17608 Cicer arietinum Ca_17608 I 0.626
Bo4g100070 Brassica oleracea Bo4g100070 I 0.626
MTR_8g026960 Medicago truncatula MTR_8g026960 I 0.626
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.624
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.624
BRADI3G50220 Brachypodium distachyon BRADI3G50220 I 0.619
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.618
cassava29431.valid.m1 Manihot esculenta cassava29431.valid.m1 I 0.614
cassava29430.valid.m1 Manihot esculenta cassava29430.valid.m1 I 0.614
Bra014417 Brassica rapa Bra014417 I 0.612
HOX24 Oryza indica BGIOSGA008720 I 0.611
SapurV1A.0239s0390 Salix purpurea SapurV1A.0239s0390 I 0.611
Pavir.Ab02438 Panicum virgatum Pavir.Ab02438 I 0.611
OPUNC02G23740 Oryza punctata OPUNC02G23740 I 0.611
ONIVA02G28400 Oryza nivara ONIVA02G28400 I 0.611
Si018237m.g Setaria italica Si018237m.g I 0.611
ORGLA02G0222500 Oryza glaberrima ORGLA02G0222500 I 0.611
ORUFI02G27420 Oryza rufipogon ORUFI02G27420 I 0.611
PGSC0003DMG400016790 Solanum tuberosum PGSC0003DMG400016790 I 0.611
HOX24 Oryza sativa OS02G0649300 I 0.611
OMERI02G25450 Oryza meridionalis OMERI02G25450 I 0.611
Sb04g033380 Sorghum bicolor Sb04g033380 I 0.611
MDP0000138651 Malus domestica MDP0000138651 I 0.611
GRMZM2G117164 Zea mays GRMZM2G117164 I 0.611
Solyc05g051460.2 Solanum lycopersicum Solyc05g051460.2 I 0.611
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.611
OGLUM02G26440 Oryza glumaepatula OGLUM02G26440 I 0.611
POPTR_0005s17390 Populus trichocarpa POPTR_0005s17390 I 0.609
30089.m001006 Ricinus communis 30089.m001006 I 0.609
SapurV1A.1957s0010 Salix purpurea SapurV1A.1957s0010 I 0.609
Pavir.J39801 Panicum virgatum Pavir.J39801 I 0.609
SapurV1A.0687s0010 Salix purpurea SapurV1A.0687s0010 I 0.609
SapurV1A.2342s0020 Salix purpurea SapurV1A.2342s0020 I 0.609
Eucgr.H01254 Eucalyptus grandis Eucgr.H01254 I 0.602
Lus10008840.g Linum usitatissimum Lus10008840.g I 0.602
BRADI4G29380 Brachypodium distachyon BRADI4G29380 I 0.602
Lus10032952.g Linum usitatissimum Lus10032952.g I 0.602
Ca_15334 Cicer arietinum Ca_15334 I 0.600
MTR_4g107650 Medicago truncatula MTR_4g107650 I 0.600
M408DRAFT_332781 Serendipita vermifera M408DRAFT_332781 I 0.600
F775_30064 Aegilops tauschii F775_30064 I 0.599