CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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VIT_17s0000g08710
(
Vitis vinifera
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
VIT_17s0000g08710
T224573_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
KNAT6
M02037_2.00
Arabidopsis thaliana
NNWGACNNNN
NNNNGTCWNN
PBM
Weirauch et al.(2014)
pTH7296
0.819
0.929
KNOX3_HORVU
M10790_2.00
Hordeum vulgare
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$KNOX3_01
0.814
0.857
GRMZM2G135447
M02139_2.00
Zea mays
DTGACRKS
SMYGTCAH
PBM
Weirauch et al.(2014)
pTH6328
0.802
0.839
GRMZM2G087741
M02138_2.00
Zea mays
NNTGACRKCN
NGMYGTCANN
PBM
Weirauch et al.(2014)
pTH5816
0.796
0.804
PK25034.1
M01254_2.00
Cannabis sativa
NNTGACRKBN
NVMYGTCANN
PBM
Lambert et al.(2019)
pTH11259
0.740
0.804
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
VIT_17s0000g08710.t01
Homeodomain
240
298
KKKGKLPKEARQALLDWWNIHYKWPYPTEEDKIALAESTGLDQKQINNWFINQRKRHWK
Links
Other
Homeodomain
family TFs
Other
Vitis vinifera
TFs
322 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy