VIT_18s0001g08410 (Vitis vinifera)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 VIT_18s0001g08410 T224578_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HAT3
M00728_2.00
Arabidopsis thaliana
DTGATTRV

BYAATCAH
PBM
Chang et al.(2013)
pTH7400
0.840 0.825
ATHB-4
M01065_2.00
Arabidopsis thaliana
NBMTGCATRNN

NNYATGCAKVN
PBM
Sullivan et al.(2014)
pTH8184
0.840 0.807
ATHB-4
M02042_2.00
Arabidopsis thaliana
NNWTNATTRN

NYAATNAWNN
PBM
Weirauch et al.(2014)
pTH8667
0.840 0.807
HAT22
M06926_2.00
Arabidopsis thaliana
NNYAATCATT

AATGATTRNN
Dap-seq
OMalley et al.(2016)
HAT22_col_a
0.784 0.825
HAT2
M06929_2.00
Arabidopsis thaliana
NHAATGATTRN

NYAATCATTDN
Dap-seq
OMalley et al.(2016)
HAT2_colamp_a
0.779 0.737
HAT2
M06930_2.00
Arabidopsis thaliana
WNYAATCATWD

HWATGATTRNW
Dap-seq
OMalley et al.(2016)
HAT2_col_v31
0.779 0.737
HAT1
M02047_2.00
Arabidopsis thaliana
NMATGATTRN

NYAATCATKN
PBM
Weirauch et al.(2014)
pTH8107
0.745 0.719
HAT1
M06922_2.00
Arabidopsis thaliana
NHAATGATTRNNWDW

WHWNNYAATCATTDN
Dap-seq
OMalley et al.(2016)
HAT1_col_a
0.745 0.719
HAT1
M06923_2.00
Arabidopsis thaliana
NYAATCATTDN

NHAATGATTRN
Dap-seq
OMalley et al.(2016)
HAT1_colamp_a
0.745 0.719
ATHB-X
M06902_2.00
Arabidopsis thaliana
HHAATRATTRN

NYAATYATTDD
Dap-seq
OMalley et al.(2016)
ATHB18_col_a
0.733 0.684
ATHB-X
M06903_2.00
Arabidopsis thaliana
NYAATGATTRV

BYAATCATTRN
Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a
0.733 0.684
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_18s0001g08410.t01 Homeodomain 125 181

Links

Other Homeodomain family TFs
Other Vitis vinifera TFs

693 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
28353.m000054 Ricinus communis 28353.m000054 I 0.000
Bo3g028500 Brassica oleracea Bo3g028500 I 0.000
Bra023026 Brassica rapa Bra023026 I 0.000
cassava4979.m1 Manihot esculenta cassava4979.m1 I 0.000
Ca_12765 Cicer arietinum Ca_12765 I 0.000
estExt_gwp_gw1.C_550163 Physcomitrella patens estExt_gwp_gw1.C_550163 D 0.000
evm.TU.supercontig_89.73 Carica papaya evm.TU.supercontig_89.73 I 0.000
e_gw1.60.212.1 Physcomitrella patens e_gw1.60.212.1 I 0.000
GLYMA05G04920 Glycine max GLYMA05G04920 I 0.000
GLYMA17G15310 Glycine max GLYMA17G15310 I 0.000
Gorai.003G175100 Gossypium raimondii Gorai.003G175100 I 0.000
Gorai.004G196700 Gossypium raimondii Gorai.004G196700 I 0.000
gw1.117.121.1 Physcomitrella patens gw1.117.121.1 I 0.000
gw1.133.82.1 Physcomitrella patens gw1.133.82.1 I 0.000
gw1.14.214.1 Physcomitrella patens gw1.14.214.1 I 0.000
gw1.15.199.1 Physcomitrella patens gw1.15.199.1 I 0.000
gw1.155.87.1 Physcomitrella patens gw1.155.87.1 I 0.000
gw1.276.83.1 Physcomitrella patens gw1.276.83.1 I 0.000
gw1.296.16.1 Physcomitrella patens gw1.296.16.1 I 0.000
gw1.480.6.1 Physcomitrella patens gw1.480.6.1 I 0.000
gw1.8.141.1 Physcomitrella patens gw1.8.141.1 D 0.000
LjT33K05.50.nd Lotus japonicus LjT33K05.50.nd I 0.000
LjT37H17.40.nd Lotus japonicus LjT37H17.40.nd I 0.000
MTR_4g100650 Medicago truncatula MTR_4g100650 I 0.000
PK25970.1 Cannabis sativa PK25970.1 I 0.000
Pm023417 Prunus mume Pm023417 I 0.000
PRUPE_ppa010340mg Prunus persica PRUPE_ppa010340mg I 0.000
TCM_015930 Theobroma cacao TCM_015930 I 0.000