VIT_18s0001g08410 (Vitis vinifera)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 VIT_18s0001g08410 T224578_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HAT3
M00728_2.00
Arabidopsis thaliana
DTGATTRV

BYAATCAH
PBM
Chang et al.(2013)
pTH7400
0.840 0.825
ATHB-4
M01065_2.00
Arabidopsis thaliana
NBMTGCATRNN

NNYATGCAKVN
PBM
Sullivan et al.(2014)
pTH8184
0.840 0.807
ATHB-4
M02042_2.00
Arabidopsis thaliana
NNWTNATTRN

NYAATNAWNN
PBM
Weirauch et al.(2014)
pTH8667
0.840 0.807
HAT22
M06926_2.00
Arabidopsis thaliana
NNYAATCATT

AATGATTRNN
Dap-seq
OMalley et al.(2016)
HAT22_col_a
0.784 0.825
HAT2
M06929_2.00
Arabidopsis thaliana
NHAATGATTRN

NYAATCATTDN
Dap-seq
OMalley et al.(2016)
HAT2_colamp_a
0.779 0.737
HAT2
M06930_2.00
Arabidopsis thaliana
WNYAATCATWD

HWATGATTRNW
Dap-seq
OMalley et al.(2016)
HAT2_col_v31
0.779 0.737
HAT1
M02047_2.00
Arabidopsis thaliana
NMATGATTRN

NYAATCATKN
PBM
Weirauch et al.(2014)
pTH8107
0.745 0.719
HAT1
M06922_2.00
Arabidopsis thaliana
NHAATGATTRNNWDW

WHWNNYAATCATTDN
Dap-seq
OMalley et al.(2016)
HAT1_col_a
0.745 0.719
HAT1
M06923_2.00
Arabidopsis thaliana
NYAATCATTDN

NHAATGATTRN
Dap-seq
OMalley et al.(2016)
HAT1_colamp_a
0.745 0.719
ATHB-X
M06902_2.00
Arabidopsis thaliana
HHAATRATTRN

NYAATYATTDD
Dap-seq
OMalley et al.(2016)
ATHB18_col_a
0.733 0.684
ATHB-X
M06903_2.00
Arabidopsis thaliana
NYAATGATTRV

BYAATCATTRN
Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a
0.733 0.684
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_18s0001g08410.t01 Homeodomain 125 181

Links

Other Homeodomain family TFs
Other Vitis vinifera TFs

693 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
nAv.1.0.1.g01810 Acanthocheilonema viteae nAv.1.0.1.g01810 N 0.000
ANCCEY_00676 Ancylostoma ceylanicum ANCCEY_00676 N 0.000
ACAC_0001162201 Angiostrongylus cantonensis ACAC_0001162201 N 0.000
ACOC_0000469501 Angiostrongylus costaricensis ACOC_0000469501 N 0.000
ASIM_0001399701 Anisakis simplex ASIM_0001399701 N 0.000
ASU_11774 Ascaris suum ASU_11774 N 0.000
Bm1901 Brugia malayi Bm1901 N 0.000
BTMF_0001079001 Brugia timori BTMF_0001079001 N 0.000
CBN03169 Caenorhabditis brenneri CBN03169 N 0.000
CBG16905 Caenorhabditis briggsae CBG16905 N 0.000
hlh-8 Caenorhabditis elegans WBGene00001953 N 0.000
CJA09725 Caenorhabditis japonica CJA09725 N 0.000
CRE24053 Caenorhabditis remanei CRE24053 N 0.000
DICVIV_00660 Dictyocaulus viviparus DICVIV_00660 N 0.000
nDi.2.2.2.g08418 Dirofilaria immitis nDi.2.2.2.g08418 N 0.000
nDi.2.2.2.g00693 Dirofilaria immitis nDi.2.2.2.g00693 N 0.000
DME_0000391901 Dracunculus medinensis DME_0000391901 N 0.000
EVEC_0000609201 Enterobius vermicularis EVEC_0000609201 N 0.000
GPUH_0000212701 Gongylonema pulchrum GPUH_0000212701 N 0.000
HPLM_0001457001 Haemonchus placei HPLM_0001457001 N 0.000
nLs.2.1.2.g08090 Litomosoides sigmodontis nLs.2.1.2.g08090 N 0.000
LOAG_10057 Loa loa LOAG_10057 N 0.000
augustus_masked-nMf.1.1.scaf09310-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf09310-processed-gene-0.0 N 0.000
NECAME_08837 Necator americanus NECAME_08837 N 0.000
NBR_0000628901 Nippostrongylus brasiliensis NBR_0000628901 N 0.000
OFLC_0000670901 Onchocerca flexuosa OFLC_0000670901 N 0.000
nOo.2.0.1.g01703 Onchocerca ochengi nOo.2.0.1.g01703 N 0.000
WBGene00245127 Onchocerca volvulus WBGene00245127 N 0.000
L596_g5997 Steinernema carpocapsae L596_g5997 N 0.000
L889_g10347 Steinernema feltiae L889_g10347 N 0.000
L893_g10009 Steinernema glaseri L893_g10009 N 0.000
L898_g8197 Steinernema monticolum L898_g8197 N 0.000
L892_g20046 Steinernema scapterisci L892_g20046 N 0.000
SMUV_0000034901 Syphacia muris SMUV_0000034901 N 0.000
TELCIR_07838 Teladorsagia circumcincta TELCIR_07838 N 0.000
TELCIR_11866 Teladorsagia circumcincta TELCIR_11866 N 0.000
TCLT_0000903001 Thelazia callipaeda TCLT_0000903001 N 0.000
TCNE_0001923701 Toxocara canis TCNE_0001923701 N 0.000
WUBG_09106 Wuchereria bancrofti WUBG_09106 N 0.000