ceh-23 (Caenorhabditis elegans)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 WBGene00000446 T224611_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ceh-23
M00671_2.00
Caenorhabditis elegans
HTAATTRNNN

NNNYAATTAD
PBM
Narasimhan et al.(2015)
pTH9478
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Dll
M02112_2.00
Drosophila melanogaster
NVTAATTANN

NNTAATTABN
PBM
Weirauch et al.(2014)
pTH5506
0.686 0.526
Dll
M03777_2.00
Drosophila melanogaster
NTAATTRN

NYAATTAN
SELEX
Nitta et al.(2015)
Dll_1
0.686 0.526
Dll
M03778_2.00
Drosophila melanogaster
NTAATTRN

NYAATTAN
SELEX
Nitta et al.(2015)
Dll_2
0.686 0.526
Dll
M06479_2.00
Drosophila melanogaster
TAATTDB

VHAATTA
B1H
Mathelier et al.(2014)
MA0187.1
0.686 0.526
Dll
M06217_2.00
Drosophila melanogaster
TAATTDB

VHAATTA
B1H
Zhu et al.(2011)
Dll_Cell_FBgn0000157
0.686 0.526
Dll
M06218_2.00
Drosophila melanogaster
TAATKR

YMATTA
B1H
Zhu et al.(2011)
Dll_SOLEXA_FBgn0000157
0.686 0.526
Dlx3
M00387_2.00
Mus musculus
NTAATDRNN

NNYHATTAN
PBM
Berger et al.(2008)
Dlx3_1030
0.684 0.491
Dlx2
M00423_2.00
Mus musculus
NTAATNDNN

NNHNATTAN
PBM
Berger et al.(2008)
Dlx2_2273
0.684 0.491
DLX2
M03118_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
DLX2_1
0.684 0.491
DLX3
M03081_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
DLX3_1
0.684 0.491
Dlx2
M03254_2.00
Mus musculus
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
Dlx2_1
0.684 0.491
DLX2
M05026_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX2_eDBD_HT-SELEX
0.684 0.491
DLX2
M05028_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX2_FL_HT-SELEX
0.684 0.491
DLX3
M04922_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX3_eDBD_HT-SELEX
0.684 0.491
DLX3
M04925_2.00
Homo sapiens
NTAATTRB

VYAATTAN
SELEX
Yin et al.(2017)
DLX3_FL_HT-SELEX
0.684 0.491
DLX3
M09129_2.00
Homo sapiens
RVTAATTRVH

DBYAATTABY
Misc
Kulakovskiy et al.(2013)
DLX3_HUMAN.H11MO.0.C
0.684 0.491
Dlx3
M09172_2.00
Mus musculus
RVTAATTRVH

DBYAATTABY
Misc
Kulakovskiy et al.(2013)
DLX3_MOUSE.H11MO.0.C
0.684 0.491
DLX2
M10674_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DLX2_Q6
0.684 0.491
dlx3.L
M10803_2.00
Xenopus laevis Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DLX3_02
0.684 0.491
DLX3
M10638_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DLX3_Q3
0.684 0.491
DLX3
M10639_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DLX3_Q6
0.684 0.491
dlx3.L
M10804_2.00
Xenopus laevis
YAWRTAAAYAWWRY

RYWWTRTTTAYWWR
Transfac
Matys et al.(2006)
V$XFD1_01
0.684 0.491
DLX2
M05027_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX2_eDBD_Methyl-HT-SELEX
0.684 0.491
DLX2
M05029_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX2_FL_Methyl-HT-SELEX
0.684 0.491
DLX3
M04923_2.00
Homo sapiens
NTWAYKHB

VDMRTWAN
SELEX
Yin et al.(2017)
DLX3_eDBD_Methyl-HT-SELEX_1
0.684 0.491
DLX3
M04924_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX3_eDBD_Methyl-HT-SELEX_2
0.684 0.491
DLX3
M04926_2.00
Homo sapiens
NTWAYGHB

VDCRTWAN
SELEX
Yin et al.(2017)
DLX3_FL_Methyl-HT-SELEX_1
0.684 0.491
DLX3
M04927_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX3_FL_Methyl-HT-SELEX_2
0.684 0.491
Dlx4
M00409_2.00
Mus musculus
NWAATNDN

NHNATTWN
PBM
Berger et al.(2008)
Dlx4_3488
0.676 0.491
Dlx1
M00491_2.00
Mus musculus
NTAATNDNN

NNHNATTAN
PBM
Berger et al.(2008)
Dlx1_1741
0.676 0.491
DLX1
M03166_2.00
Homo sapiens
NNTAATTDNN

NNHAATTANN
SELEX
Jolma et al.(2013)
DLX1_1
0.676 0.491
DLX4
M03112_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
DLX4_1
0.676 0.491
DLX6
M03078_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
DLX6_1
0.676 0.491
Dlx1
M03281_2.00
Mus musculus
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
Dlx1_1
0.676 0.491
DLX1
M05176_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX1_eDBD_HT-SELEX
0.676 0.491
DLX1
M05178_2.00
Homo sapiens
NTAATTRB

VYAATTAN
SELEX
Yin et al.(2017)
DLX1_FL_HT-SELEX
0.676 0.491
DLX4
M05002_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX4_eDBD_HT-SELEX
0.676 0.491
DLX4
M05005_2.00
Homo sapiens
NTAATTRB

VYAATTAN
SELEX
Yin et al.(2017)
DLX4_FL_HT-SELEX
0.676 0.491
DLX6
M04905_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX6_eDBD_HT-SELEX
0.676 0.491
DLX1
M05177_2.00
Homo sapiens
NTAATTRB

VYAATTAN
SELEX
Yin et al.(2017)
DLX1_eDBD_Methyl-HT-SELEX
0.676 0.491
DLX1
M05179_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX1_FL_Methyl-HT-SELEX
0.676 0.491
DLX4
M05003_2.00
Homo sapiens
NTAAYRAB

VTYRTTAN
SELEX
Yin et al.(2017)
DLX4_eDBD_Methyl-HT-SELEX_1
0.676 0.491
DLX4
M05004_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX4_eDBD_Methyl-HT-SELEX_2
0.676 0.491
DLX4
M05006_2.00
Homo sapiens
NTAAYKAB

VTMRTTAN
SELEX
Yin et al.(2017)
DLX4_FL_Methyl-HT-SELEX_1
0.676 0.491
DLX4
M05007_2.00
Homo sapiens
NTAATTRB

VYAATTAN
SELEX
Yin et al.(2017)
DLX4_FL_Methyl-HT-SELEX_2
0.676 0.491
DLX6
M04906_2.00
Homo sapiens
NTAAYKAB

VTMRTTAN
SELEX
Yin et al.(2017)
DLX6_eDBD_Methyl-HT-SELEX_1
0.676 0.491
DLX6
M04907_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX6_eDBD_Methyl-HT-SELEX_2
0.676 0.491
Dlx5
M00449_2.00
Mus musculus
WRATNDN

NHNATYW
PBM
Berger et al.(2008)
Dlx5_3419
0.674 0.474
DLX5
M03095_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
DLX5_1
0.674 0.474
DLX5
M04953_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX5_eDBD_HT-SELEX
0.674 0.474
DLX5
M04956_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX5_FL_HT-SELEX
0.674 0.474
Dlx5
M09195_2.00
Mus musculus
WAATTRYWKBB

VVMWRYAATTW
Misc
Kulakovskiy et al.(2013)
DLX5_MOUSE.H11MO.0.C
0.674 0.474
DLX5
M10650_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DLX5_Q3
0.674 0.474
DLX5
M04954_2.00
Homo sapiens
NTAAYDAB

VTHRTTAN
SELEX
Yin et al.(2017)
DLX5_eDBD_Methyl-HT-SELEX_1
0.674 0.474
DLX5
M04955_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX5_eDBD_Methyl-HT-SELEX_2
0.674 0.474
DLX5
M04957_2.00
Homo sapiens
NTAAYGHB

VDCRTTAN
SELEX
Yin et al.(2017)
DLX5_FL_Methyl-HT-SELEX_1
0.674 0.474
DLX5
M04958_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX5_FL_Methyl-HT-SELEX_2
0.674 0.474
ro
M06495_2.00
Drosophila melanogaster
YTAATTA

TAATTAR
B1H
Mathelier et al.(2014)
MA0241.1
0.632 0.439
ro
M06264_2.00
Drosophila melanogaster
NYTAATTA

TAATTARN
B1H
Zhu et al.(2011)
Ro_Cell_FBgn0003267
0.632 0.439
ro
M06265_2.00
Drosophila melanogaster
HTAATTR

YAATTAD
B1H
Zhu et al.(2011)
Ro_SOLEXA_FBgn0003267
0.632 0.439
Lhx1
M00405_2.00
Mus musculus
TRATDRNNN

NNNYHATYA
PBM
Berger et al.(2008)
Lhx1_2240
0.631 0.404
Lhx5
M00445_2.00
Mus musculus
TAATKRNNN

NNNYMATTA
PBM
Berger et al.(2008)
Lhx5_2279
0.631 0.404
LHX1
M05410_2.00
Homo sapiens
NTRATBRN

NYVATYAN
SELEX
Yin et al.(2017)
LHX1_eDBD_HT-SELEX
0.631 0.404
LHX5
M04936_2.00
Homo sapiens
NTAATTRS

SYAATTAN
SELEX
Yin et al.(2017)
LHX5_FL_HT-SELEX
0.631 0.404
LHX1
M05411_2.00
Homo sapiens
NHRAYGHN

NDCRTYDN
SELEX
Yin et al.(2017)
LHX1_eDBD_Methyl-HT-SELEX
0.631 0.404
LHX5
M04937_2.00
Homo sapiens
NTAAYGAN

NTCRTTAN
SELEX
Yin et al.(2017)
LHX5_FL_Methyl-HT-SELEX_1
0.631 0.404
LHX5
M04938_2.00
Homo sapiens
NTAATTRV

BYAATTAN
SELEX
Yin et al.(2017)
LHX5_FL_Methyl-HT-SELEX_2
0.631 0.404
Lim1
M03853_2.00
Drosophila melanogaster
NTAATTRN

NYAATTAN
SELEX
Nitta et al.(2015)
Lim1_1
0.620 0.368
Lim1
M06529_2.00
Drosophila melanogaster
TTAATTA

TAATTAA
B1H
Mathelier et al.(2014)
MA0194.1
0.620 0.368
Lim1
M06332_2.00
Drosophila melanogaster
TTAATTA

TAATTAA
B1H
Zhu et al.(2011)
Lim1_Cell_FBgn0026411
0.620 0.368
Lim1
M06333_2.00
Drosophila melanogaster
HTAATTR

YAATTAD
B1H
Zhu et al.(2011)
Lim1_SOLEXA_FBgn0026411
0.620 0.368
MSX2
M00290_2.00
Homo sapiens
WDATNDNN

NNHNATHW
PBM
Barrera et al.(2016)
MSX2_REF
0.613 0.456
Msx2
M00414_2.00
Mus musculus
HRATKRNN

NNYMATYD
PBM
Berger et al.(2008)
Msx2_3449
0.613 0.456
Msx3
M00429_2.00
Mus musculus
TAATKDNN

NNHMATTA
PBM
Berger et al.(2008)
Msx3_3206
0.613 0.456
Msx1
M00501_2.00
Mus musculus
NHDATND

HNATHDN
PBM
Berger et al.(2008)
Msx1_3031
0.613 0.456
Dr
M00555_2.00
Drosophila melanogaster
TAATTRNN

NNYAATTA
PBM
Busser et al.(2012a)
Msh
0.613 0.456
MSX1
M03184_2.00
Homo sapiens
TAATTRBHHNHTAATTRN

NYAATTADNDDVYAATTA
SELEX
Jolma et al.(2013)
MSX1_1
0.613 0.456
MSX1
M03185_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
MSX1_2
0.613 0.456
MSX1
M03186_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
MSX1_3
0.613 0.456
MSX2
M03127_2.00
Homo sapiens
TAATTRBHWKWTAATTGV

BCAATTAWMWDVYAATTA
SELEX
Jolma et al.(2013)
MSX2_1
0.613 0.456
MSX2
M03128_2.00
Homo sapiens
NTAATTGB

VCAATTAN
SELEX
Jolma et al.(2013)
MSX2_2
0.613 0.456
Msx3
M03255_2.00
Mus musculus
TAATTGSHHNNTAATTRN

NYAATTANNDDSCAATTA
SELEX
Jolma et al.(2013)
Msx3_1
0.613 0.456
Msx3
M03256_2.00
Mus musculus
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
Msx3_2
0.613 0.456
MSX1
M05221_2.00
Homo sapiens
NTAATTRV

BYAATTAN
SELEX
Yin et al.(2017)
MSX1_eDBD_HT-SELEX
0.613 0.456
MSX1
M05224_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
MSX1_FL_HT-SELEX
0.613 0.456
MSX2
M05060_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
MSX2_eDBD_HT-SELEX
0.613 0.456
Dr
M06482_2.00
Drosophila melanogaster
TAATTGS

SCAATTA
B1H
Mathelier et al.(2014)
MA0188.1
0.613 0.456
Dr
M06229_2.00
Drosophila melanogaster
TAATTGSHB

VDSCAATTA
B1H
Zhu et al.(2011)
Dr_Cell_FBgn0000492
0.613 0.456
Dr
M06230_2.00
Drosophila melanogaster
TAATTR

YAATTA
B1H
Zhu et al.(2011)
Dr_SOLEXA_FBgn0000492
0.613 0.456
MSX1
M10715_2.00
Homo sapiens
HNBTWWNTG

CANWWAVND
Transfac
Matys et al.(2006)
V$MSX1_01
0.613 0.456
MSX1
M10716_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MSX1_Q5_01
0.613 0.456
MSX1
M10717_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MSX1_Q5
0.613 0.456
MSX2
M10677_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MSX2_Q3
0.613 0.456
MSX2
M10678_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MSX2_Q6
0.613 0.456
MSX2
M00288_2.00
Homo sapiens
NTAATNDN

NHNATTAN
PBM
Barrera et al.(2016)
MSX2_P148H
0.613 0.456
MSX1
M05222_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
MSX1_eDBD_Methyl-HT-SELEX_1
0.613 0.456
MSX1
M05223_2.00
Homo sapiens
NTWAYGMB

VKCRTWAN
SELEX
Yin et al.(2017)
MSX1_eDBD_Methyl-HT-SELEX_2
0.613 0.456
MSX1
M05225_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
MSX1_FL_Methyl-HT-SELEX_1
0.613 0.456
MSX1
M05226_2.00
Homo sapiens
NTWAYGWB

VWCRTWAN
SELEX
Yin et al.(2017)
MSX1_FL_Methyl-HT-SELEX_2
0.613 0.456
MSX2
M05061_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
MSX2_eDBD_Methyl-HT-SELEX_1
0.613 0.456
MSX2
M05062_2.00
Homo sapiens
NTAAYGAB

VTCRTTAN
SELEX
Yin et al.(2017)
MSX2_eDBD_Methyl-HT-SELEX_2
0.613 0.456
Lbx2
M00465_2.00
Mus musculus
NHAABNRN

NYNVTTDN
PBM
Berger et al.(2008)
Lbx2_3869
0.612 0.491
LBX2
M03224_2.00
Homo sapiens
TAAYYRSNTYNAB

VTNRANSYRRTTA
SELEX
Jolma et al.(2013)
LBX2_1
0.612 0.491
LBX2
M03225_2.00
Homo sapiens
NNTAATTRVN

NBYAATTANN
SELEX
Jolma et al.(2013)
LBX2_2
0.612 0.491
LBX2
M05321_2.00
Homo sapiens
HTAAYRAG

CTYRTTAD
SELEX
Yin et al.(2017)
LBX2_eDBD_HT-SELEX_1
0.612 0.491
LBX2
M05322_2.00
Homo sapiens
NTAATTAAYKRG

CYMRTTAATTAN
SELEX
Yin et al.(2017)
LBX2_eDBD_HT-SELEX_2
0.612 0.491
LBX2
M05323_2.00
Homo sapiens
VYTAATTRGB

VCYAATTARB
SELEX
Yin et al.(2017)
LBX2_eDBD_HT-SELEX_3
0.612 0.491
LBX2
M05324_2.00
Homo sapiens
HTAAYGAG

CTCRTTAD
SELEX
Yin et al.(2017)
LBX2_eDBD_Methyl-HT-SELEX_1
0.612 0.491
LBX2
M05325_2.00
Homo sapiens
ATAATTAATKAG

CTMATTAATTAT
SELEX
Yin et al.(2017)
LBX2_eDBD_Methyl-HT-SELEX_2
0.612 0.491
LBX2
M05326_2.00
Homo sapiens
NNTAATKRDN

NHYMATTANN
SELEX
Yin et al.(2017)
LBX2_eDBD_Methyl-HT-SELEX_3
0.612 0.491
KLLA0_D10043g
M02140_2.00
Kluyveromyces lactis
NNNNWWNNNN

NNNNWWNNNN
PBM
Weirauch et al.(2014)
pTH6070
0.610 0.333
bsh
M02113_2.00
Drosophila melanogaster
NNTAAYBDNN

NNHVRTTANN
PBM
Weirauch et al.(2014)
pTH6569
0.606 0.526
bsh
M03786_2.00
Drosophila melanogaster
TAATYTAATTA

TAATTARATTA
SELEX
Nitta et al.(2015)
bsh_1
0.606 0.526
bsh
M03787_2.00
Drosophila melanogaster
TAATTRVWTAATKR

YMATTAWBYAATTA
SELEX
Nitta et al.(2015)
bsh_2
0.606 0.526
bsh
M03788_2.00
Drosophila melanogaster
NTAATBRN

NYVATTAN
SELEX
Nitta et al.(2015)
bsh_3
0.606 0.526
bsh
M06483_2.00
Drosophila melanogaster
YTAATBR

YVATTAR
B1H
Mathelier et al.(2014)
MA0214.1
0.606 0.526
bsh
M06231_2.00
Drosophila melanogaster
HYTAATBRV

BYVATTARD
B1H
Zhu et al.(2011)
Bsh_Cell_FBgn0000529
0.606 0.526
bsh
M06232_2.00
Drosophila melanogaster
NTAATKR

YMATTAN
B1H
Zhu et al.(2011)
Bsh_SOLEXA_FBgn0000529
0.606 0.526
MSX2
M00289_2.00
Homo sapiens
WDATWDNN

NNHWATHW
PBM
Barrera et al.(2016)
MSX2_R172H
0.605 0.439
Bsx
M00516_2.00
Mus musculus
NTAAYBDNN

NNHVRTTAN
PBM
Berger et al.(2008)
Bsx_3483
0.600 0.491
BSX
M03235_2.00
Homo sapiens
NTAATBRN

NYVATTAN
SELEX
Jolma et al.(2013)
BSX_1
0.600 0.491
BSX
M05377_2.00
Homo sapiens
NTAAYGHB

VDCRTTAN
SELEX
Yin et al.(2017)
BSX_eDBD_HT-SELEX_1
0.600 0.491
BSX
M05378_2.00
Homo sapiens
BTAATBRV

BYVATTAV
SELEX
Yin et al.(2017)
BSX_eDBD_HT-SELEX_2
0.600 0.491
BSX
M05379_2.00
Homo sapiens
NTAAYGHB

VDCRTTAN
SELEX
Yin et al.(2017)
BSX_eDBD_Methyl-HT-SELEX_1
0.600 0.491
BSX
M05380_2.00
Homo sapiens
NTAATKRN

NYMATTAN
SELEX
Yin et al.(2017)
BSX_eDBD_Methyl-HT-SELEX_2
0.600 0.491
For this family, TFs with SR scores > 0.599 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00671_2.00 Homeodomain 51 107

DNA Binding Domains

Protein ID Domain From To Sequence
ZK652.5 Homeodomain 212 268

Links

Other Homeodomain family TFs
Other Caenorhabditis elegans TFs

Invalid Input OrderBy

1398 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action