pha-2 (Caenorhabditis elegans)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 WBGene00004011 T224638_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
pha-2
M02184_2.00
Caenorhabditis elegans
NNNATNDNNN

NNNHNATNNN
PBM
Weirauch et al.(2014)
pTH6423
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HHEX
M06541_2.00
Drosophila melanogaster
WYBAATWA

TWATTVRW
B1H
Mathelier et al.(2014)
MA0183.1
0.826 0.719
HHEX
M06358_2.00
Drosophila melanogaster
WYBAATWA

TWATTVRW
B1H
Zhu et al.(2011)
CG7056_Cell_FBgn0038852
0.826 0.719
HHEX
M06359_2.00
Drosophila melanogaster
NYBAATWR

YWATTVRN
B1H
Zhu et al.(2011)
CG7056_SOLEXA_FBgn0038852
0.826 0.719
For this family, TFs with SR scores > 0.599 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02184_2.00 Homeodomain 1 57

DNA Binding Domains

Protein ID Domain From To Sequence
M6.3 Homeodomain 77 133

Links

Other Homeodomain family TFs
Other Caenorhabditis elegans TFs

156 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
nAv.1.0.1.g00022 Acanthocheilonema viteae nAv.1.0.1.g00022 I 0.839
AAEL004707 Aedes aegypti AAEL004707 I 0.683
ENSAMEG00000014091 Ailuropoda melanoleuca ENSAMEG00000014091 I 0.708
Alligator_sinensis_CCG013675.1 Alligator sinensis Alligator_sinensis_CCG013675.1 I 0.708
ENSAPLG00000004046 Anas platyrhynchos ENSAPLG00000004046 I 0.708
ACOC_0000843601 Angiostrongylus costaricensis ACOC_0000843601 I 0.866
ASIM_0001155801 Anisakis simplex ASIM_0001155801 I 0.839
HHEX Anolis carolinensis ENSACAG00000006660 I 0.708
AARA001840 Anopheles arabiensis AARA001840 I 0.683
AATE006277 Anopheles atroparvus AATE006277 I 0.683
ACHR001525 Anopheles christyi ACHR001525 I 0.683
ACOM034050 Anopheles coluzzii ACOM034050 I 0.683
ACUA024331 Anopheles culicifacies ACUA024331 I 0.683
ADIR002846 Anopheles dirus ADIR002846 I 0.683
AEPI001110 Anopheles epiroticus AEPI001110 I 0.683
AFAF018650 Anopheles farauti AFAF018650 I 0.683
AFUN007808 Anopheles funestus AFUN007808 I 0.683
AGAP001389 Anopheles gambiae AGAP001389 I 0.683
AMAM015319 Anopheles maculatus AMAM015319 I 0.683
AMEC012825 Anopheles melas AMEC012825 I 0.683
AMEM017315 Anopheles merus AMEM017315 I 0.683
AMIN000568 Anopheles minimus AMIN000568 I 0.683
AQUA006568 Anopheles quadriannulatus AQUA006568 I 0.683
ASIS014034 Anopheles sinensis ASIS014034 I 0.683
ASTEI07538 Anopheles stephensi ASTEI07538 I 0.683
Afo_R002655 Aptenodytes forsteri Afo_R002655 I 0.708
ASU_02199 Ascaris suum ASU_02199 I 0.848
ENSAMXG00000011188 Astyanax mexicanus ENSAMXG00000011188 I 0.708
BGIBMGA010054 Bombyx mori BGIBMGA010054 I 0.683
ENSBTAP00000018899-D1 Bos grunniens ENSBTAP00000018899-D1 I 0.708
HHEX Bos taurus ENSBTAG00000014217 I 0.708
e_gw.54.243.1 Branchiostoma floridae e_gw.54.243.1 I 0.724
e_gw.56.215.1 Branchiostoma floridae e_gw.56.215.1 I 0.724
Bm5107 Brugia malayi Bm5107 I 0.850
BTMF_0001400701 Brugia timori BTMF_0001400701 I 0.850
BXY_0632900 Bursaphelenchus xylophilus BXY_0632900 I 0.839
CBN29205 Caenorhabditis brenneri CBN29205 I 0.867
CBG08137 Caenorhabditis briggsae CBG08137 I 0.867
CRE17126 Caenorhabditis remanei CRE17126 I 0.867
HHEX Callithrix jacchus ENSCJAG00000008627 I 0.708
HHEX Canis familiaris ENSCAFG00000007502 I 0.708
CapteG129537 Capitella teleta CapteG129537 I 0.680
CapteG110019 Capitella teleta CapteG110019 I 0.680
ENSCPOG00000021993 Cavia porcellus ENSCPOG00000021993 I 0.708
Cmyd_10016939 Chelonia mydas Cmyd_10016939 I 0.708
ENSCSAG00000006543 Chlorocebus sabaeus ENSCSAG00000006543 I 0.708
HHEX Choloepus hoffmanni ENSCHOG00000005837 I 0.708
hex Ciona intestinalis ENSCING00000001270 I 0.709
ENSCSAVG00000001801 Ciona savignyi ENSCSAVG00000001801 I 0.709
CGI_10025054 Crassostrea gigas CGI_10025054 I 0.712
CpipJ_CPIJ003318 Culex pipiens CpipJ_CPIJ003318 I 0.683
CPIJ003318 Culex quinquefasciatus CPIJ003318 I 0.683
KGM_13906 Danaus plexippus KGM_13906 I 0.695
DAPPUDRAFT_229438 Daphnia pulex DAPPUDRAFT_229438 I 0.799
HHEX Dasypus novemcinctus ENSDNOG00000041940 I 0.708
nDi.2.2.2.g05290 Dirofilaria immitis nDi.2.2.2.g05290 I 0.851
DME_0000899101 Dracunculus medinensis DME_0000899101 I 0.838
GF18520 Drosophila ananassae FBgn0095538 I 0.826
GG14915 Drosophila erecta FBgn0107169 I 0.826
GH19308 Drosophila grimshawi FBgn0126773 I 0.826
HHEX Drosophila melanogaster FBgn0038852 D 0.826
GI23524 Drosophila mojavensis FBgn0146250 I 0.826
GL12681 Drosophila persimilis FBgn0150287 I 0.826
GA20065 Drosophila pseudoobscura FBgn0080061 I 0.826
GM15106 Drosophila sechellia FBgn0170026 I 0.826
GD20010 Drosophila simulans FBgn0191493 I 0.826
GJ10276 Drosophila virilis FBgn0197562 I 0.826
GK13080 Drosophila willistoni FBgn0215089 I 0.826
HHEX Equus caballus ENSECAG00000005199 I 0.708
HHEX Felis catus ENSFCAG00000023875 I 0.708
ENSFALG00000007921 Ficedula albicollis ENSFALG00000007921 I 0.708
ENSGMOG00000011697 Gadus morhua ENSGMOG00000011697 I 0.708
ENSGALG00000029169 Gallus gallus ENSGALG00000029169 I 0.708
HHEX Gasterosteus aculeatus ENSGACG00000015385 I 0.708
GPLIN_000004000 Globodera pallida GPLIN_000004000 I 0.838
ENSGGOG00000027676 Gorilla gorilla ENSGGOG00000027676 I 0.708
ENSGGOG00000026464 Gorilla gorilla ENSGGOG00000026464 I 0.708
HCOI01904700 Haemonchus contortus HCOI01904700 I 0.862
HPLM_0000551901 Haemonchus placei HPLM_0000551901 I 0.862
HMEL004646 Heliconius melpomene HMEL004646 I 0.695
HelroG80789 Helobdella robusta HelroG80789 I 0.793
HHEX Homo sapiens ENSG00000152804 I 0.708
ENSSTOG00000006255 Ictidomys tridecemlineatus ENSSTOG00000006255 I 0.708
ENSLACG00000009588 Latimeria chalumnae ENSLACG00000009588 I 0.682
ENSLACG00000014170 Latimeria chalumnae ENSLACG00000014170 I 0.708
ENSLOCG00000007051 Lepisosteus oculatus ENSLOCG00000007051 I 0.708
nLs.2.1.2.g00270 Litomosoides sigmodontis nLs.2.1.2.g00270 I 0.838
LOAG_11830 Loa loa LOAG_11830 I 0.851
LotgiG128951 Lottia gigantea LotgiG128951 I 0.712
ENSLAFG00000005359 Loxodonta africana ENSLAFG00000005359 I 0.708
LCUP007736 Lucilia cuprina LCUP007736 I 0.826
LLOJ007496 Lutzomyia longipalpis LLOJ007496 I 0.683
ENSP00000282728 Macaca fascicularis ENSP00000282728 I 0.708
HHEX Macaca mulatta ENSMMUG00000011789 I 0.708
ENSMEUG00000004291 Macropus eugenii ENSMEUG00000004291 I 0.708
MESCA008304 Megaselia scalaris MESCA008304 I 0.826
ENSMGAG00000009052 Meleagris gallopavo ENSMGAG00000009052 I 0.708
augustus_masked-nMf.1.1.scaf09384-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf09384-processed-gene-0.0 I 0.812
MhA1_Contig193.frz3.gene1 Meloidogyne hapla MhA1_Contig193.frz3.gene1 I 0.817
HHEX Monodelphis domestica ENSMODG00000006444 I 0.708
ENSMPUG00000017219 Mustela putorius furo ENSMPUG00000017219 I 0.708
Hhex Mus musculus ENSMUSG00000024986 I 0.708
Myotis_brandtii_KIF11_10018005 Myotis brandtii Myotis_brandtii_KIF11_10018005 I 0.708
ENSMLUG00000013333 Myotis lucifugus ENSMLUG00000013333 I 0.708
ENSMLUG00000024763 Myotis lucifugus ENSMLUG00000024763 I 0.708
NEMVEDRAFT_v1g39891 Nematostella vectensis NEMVEDRAFT_v1g39891 I 0.706
NBR_0000887601 Nippostrongylus brasiliensis NBR_0000887601 I 0.867
HHEX Ochotona princeps ENSOPRG00000003896 I 0.708
OFLC_0000354301 Onchocerca flexuosa OFLC_0000354301 I 0.855
nOo.2.0.1.g09114 Onchocerca ochengi nOo.2.0.1.g09114 I 0.855
WBGene00240685 Onchocerca volvulus WBGene00240685 I 0.855
Ogr00908 Ophisaurus gracilis Ogr00908 I 0.708
ENSONIG00000007247 Oreochromis niloticus ENSONIG00000007247 I 0.708
HHEX Oryctolagus cuniculus ENSOCUG00000016719 I 0.708
HHEX Otolemur garnettii ENSOGAG00000015201 I 0.708
HHEX Pan troglodytes ENSPTRG00000002760 I 0.708
ENSPANG00000021555 Papio anubis ENSPANG00000021555 I 0.708
PTRK_0000720600 Parastrongyloides trichosuri PTRK_0000720600 I 0.862
ENSPSIG00000015884 Pelodiscus sinensis ENSPSIG00000015884 I 0.708
ENSPMAG00000009445 Petromyzon marinus ENSPMAG00000009445 I 0.704
ENSPFOG00000009869 Poecilia formosa ENSPFOG00000009869 I 0.708
Pvit_14369 Pogona vitticeps Pvit_14369 I 0.708
ENSPPYG00000002486 Pongo abelii ENSPPYG00000002486 I 0.708
scaffold24-EXSNAP2012.65 Pristionchus exspectatus scaffold24-EXSNAP2012.65 I 0.802
HHEX Pteropus vampyrus ENSPVAG00000007094 I 0.708
Hhex Rattus norvegicus ENSRNOG00000016595 I 0.708
RSKR_0000094800 Rhabditophanes kr3021 RSKR_0000094800 I 0.841
nRc.2.0.1.g06585 Romanomermis culicivorax nRc.2.0.1.g06585 I 0.842
Sakowv30040087m.g Saccoglossus kowalevskii Sakowv30040087m.g I 0.720
ENSSHAG00000018185 Sarcophilus harrisii ENSSHAG00000018185 I 0.708
L596_g25649 Steinernema carpocapsae L596_g25649 I 0.860
L889_g29725 Steinernema feltiae L889_g29725 I 0.860
L898_g1404 Steinernema monticolum L898_g1404 I 0.860
L892_g7017 Steinernema scapterisci L892_g7017 I 0.860
SMAR000779 Strigamia maritima SMAR000779 I 0.705
SPU_027215 Strongylocentrotus purpuratus SPU_027215 I 0.708
SPAL_0000841600 Strongyloides papillosus SPAL_0000841600 I 0.862
SSTP_0000145800 Strongyloides stercoralis SSTP_0000145800 I 0.862
SVE_1799000 Strongyloides venezuelensis SVE_1799000 I 0.862
ENSSSCG00000010472 Sus scrofa ENSSSCG00000010472 I 0.708
ENSTGUG00000008924 Taeniopygia guttata ENSTGUG00000008924 I 0.708
ENSTGUG00000013882 Taeniopygia guttata ENSTGUG00000013882 I 0.708
HHEX Takifugu rubripes ENSTRUG00000004234 I 0.708
TELCIR_00798 Teladorsagia circumcincta TELCIR_00798 I 0.862
tetur29g00560 Tetranychus urticae tetur29g00560 I 0.812
HHEX Tetraodon nigroviridis ENSTNIG00000005879 I 0.708
TCLT_0000379201 Thelazia callipaeda TCLT_0000379201 I 0.834
TC004555 Tribolium castaneum TC004555 I 0.701
TriadG9560 Trichoplax adhaerens TriadG9560 I 0.836
ENSTBEG00000001339 Tupaia belangeri ENSTBEG00000001339 I 0.708
HHEX Tursiops truncatus ENSTTRG00000012365 I 0.708
HHEX Vicugna pacos ENSVPAG00000009916 I 0.708
WUBG_10995 Wuchereria bancrofti WUBG_10995 I 0.850
hhex.L Xenopus laevis XB-GENE-865680 I 0.708
hhex Xenopus tropicalis XB-GENE-487159 I 0.708
L798_02156 Zootermopsis nevadensis L798_02156 I 0.683