CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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YQE_03710
(
Dendroctonus ponderosae
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
YQE_03710
T224790_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Six4
M00563_2.00
Drosophila melanogaster
NNDANMHNN
NNDKNTHNN
PBM
Busser et al.(2012a)
Six4
0.622
0.738
Six4
M06530_2.00
Drosophila melanogaster
TGABAC
GTVTCA
B1H
Mathelier et al.(2014)
MA0204.1
0.622
0.738
Six4
M06334_2.00
Drosophila melanogaster
WDDTGABAC
GTVTCAHHW
B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364
0.622
0.738
Six4
M06335_2.00
Drosophila melanogaster
NTGAKACB
VGTMTCAN
B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364
0.622
0.738
Six4
M06336_2.00
Drosophila melanogaster
NNNTGABA
TVTCANNN
B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364
0.622
0.738
SIX5
M08208_2.00
Homo sapiens
GARWTGTAGT
ACTACAWYTC
ChIP-seq
Contrino et al.(2012)
Mv121
0.622
0.667
SIX5
M08209_2.00
Homo sapiens
GGAGTTGT
ACAACTCC
ChIP-seq
Contrino et al.(2012)
Mv123
0.622
0.667
SIX5
M10738_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX5_01
0.622
0.667
SIX5
M10739_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX5_02
0.622
0.667
Six4
M00461_2.00
Mus musculus
NNKABMHNN
NNDKVTMNN
PBM
Berger et al.(2008)
Six4_2860
0.599
0.619
SIX4
M04939_2.00
Homo sapiens
NVYGATACVB
VBGTATCRBN
SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX
0.599
0.619
Six4
M09198_2.00
Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH
Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C
0.599
0.619
SIX4
M10646_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX4_Q3
0.599
0.619
SIX4
M04940_2.00
Homo sapiens
NBGTAWCRHN
NDYGWTACVN
SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX
0.599
0.619
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENN79891
Homeodomain
257
299
ERSRNALKEYPTPDEKKALSKRTGLTLTQVSNWFKNRRQRDRT
Links
Other
Homeodomain
family TFs
Other
Dendroctonus ponderosae
TFs
180 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy