YQE_10102 (Dendroctonus ponderosae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 YQE_10102 T224827_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nkx3-2
M00506_2.00 		Mus musculus
NNRAGDRNN
NNYHCTYNN		 PBM
Berger et al.(2008)
Bapx1_2343 		0.835 0.912
NKX3-2
M05012_2.00 		Homo sapiens
NNTAAGTGSN
NSCACTTANN		 SELEX
Yin et al.(2017)
NKX3-2_eDBD_HT-SELEX 		0.835 0.912
NKX3-2
M09138_2.00 		Homo sapiens
TTAAGTGBNH
DNVCACTTAA		 Misc
Kulakovskiy et al.(2013)
NKX32_HUMAN.H11MO.0.C 		0.835 0.912
Nkx3-2
M09212_2.00 		Mus musculus
TTAAGTGBNH
DNVCACTTAA		 Misc
Kulakovskiy et al.(2013)
NKX32_MOUSE.H11MO.0.B 		0.835 0.912
NKX3-2
M10663_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX32_01 		0.835 0.912
NKX3-2
M05013_2.00 		Homo sapiens
NNTAAGTGBN
NVCACTTANN		 SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_1 		0.835 0.912
NKX3-2
M05014_2.00 		Homo sapiens
NTAACGHB
VDCGTTAN		 SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_2 		0.835 0.912
bap
M00560_2.00 		Drosophila melanogaster
NDAAGTRBNN
NNVYACTTHN		 PBM
Busser et al.(2012a)
Bap 		0.833 0.842
bap
M02119_2.00 		Drosophila melanogaster
NYTAAGTRSNN
NNSYACTTARN		 PBM
Weirauch et al.(2014)
pTH5945 		0.833 0.842
bap
M03812_2.00 		Drosophila melanogaster
NNTAAGTGBN
NVCACTTANN		 SELEX
Nitta et al.(2015)
bap_1 		0.833 0.842
bap
M06504_2.00 		Drosophila melanogaster
TTAAGTR
YACTTAA		 B1H
Mathelier et al.(2014)
MA0211.1 		0.833 0.842
bap
M06287_2.00 		Drosophila melanogaster
NBTTAAGTRN
NYACTTAAVN		 B1H
Zhu et al.(2011)
Bap_Cell_FBgn0004862 		0.833 0.842
bap
M06288_2.00 		Drosophila melanogaster
NYTAAKTR
YAMTTARN		 B1H
Zhu et al.(2011)
Bap_SOLEXA_FBgn0004862 		0.833 0.842
ENSCING00000007395
M02076_2.00 		Ciona intestinalis
NNNDWNWR
YWNWHNNN		 PBM
Weirauch et al.(2014)
pTH5922 		0.826 0.719
Nkx3-1
M00170_2.00 		Mus musculus
NDAAGTRBNN
NNVYACTTHN		 PBM
Badis et al.(2009)
Nkx3-1_2923 		0.820 0.807
Nkx3-1
M00420_2.00 		Mus musculus
NNAAGTRBNN
NNVYACTTNN		 PBM
Berger et al.(2008)
Nkx3-1_2923 		0.820 0.807
NKX3-1
M05255_2.00 		Homo sapiens
NNTAAGTGSN
NSCACTTANN		 SELEX
Yin et al.(2017)
NKX3-1_eDBD_HT-SELEX 		0.820 0.807
NKX3-1
M09154_2.00 		Homo sapiens
NYDAAGTGBYWD
HWRVCACTTHRN		 Misc
Kulakovskiy et al.(2013)
NKX31_HUMAN.H11MO.0.C 		0.820 0.807
Nkx3-1
M09184_2.00 		Mus musculus
NYDAAGTGBYWD
HWRVCACTTHRN		 Misc
Kulakovskiy et al.(2013)
NKX31_MOUSE.H11MO.0.C 		0.820 0.807
NKX3-1
M09559_2.00 		Homo sapiens
BTRAGTRBYY
RRVYACTYAV		 Misc
Heinz et al.(2010)
LNCaP-Nkx3.1_GSE28264 		0.820 0.807
NKX3-1
M10729_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_01 		0.820 0.807
NKX3-1
M10730_2.00 		Homo sapiens
NWWTAAGTATWH
DWATACTTAWWN		 Transfac
Matys et al.(2006)
V$NKX3A_01 		0.820 0.807
NKX3-1
M10731_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX3A_Q3 		0.820 0.807
NKX3-1
M05256_2.00 		Homo sapiens
NNTAAGTGBN
NVCACTTANN		 SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_1 		0.820 0.807
NKX3-1
M05257_2.00 		Homo sapiens
NTAAYSWB
VWSRTTAN		 SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_2 		0.820 0.807
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENN73342 Homeodomain 62 118

Links

Other Homeodomain family TFs
Other Dendroctonus ponderosae TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LDEC009723 Leptinotarsa decemlineata LDEC009723 I 0.867
TC012743 Tribolium castaneum TC012743 I 0.867
PHUM439840 Pediculus humanus PHUM439840 I 0.850
SPU_013047 Strongylocentrotus purpuratus SPU_013047 I 0.848
estExt_fgenesh2_pg.C_1430013 Branchiostoma floridae estExt_fgenesh2_pg.C_1430013 I 0.848
CGI_10023919 Crassostrea gigas CGI_10023919 I 0.847
SMAR005030 Strigamia maritima SMAR005030 I 0.847
Sakowv30040088m.g Saccoglossus kowalevskii Sakowv30040088m.g I 0.847
nkx3-3 Xenopus tropicalis XB-GENE-479908 I 0.846
ENSPFOG00000020885 Poecilia formosa ENSPFOG00000020885 I 0.846
ENSLOCG00000009031 Lepisosteus oculatus ENSLOCG00000009031 I 0.846
ENSORLG00000007716 Oryzias latipes ENSORLG00000007716 I 0.846
ENSXMAG00000020095 Xiphophorus maculatus ENSXMAG00000020095 I 0.846
ENSAMXG00000002250 Astyanax mexicanus ENSAMXG00000002250 I 0.845
nkx3.3 Danio rerio ENSDARG00000069327 I 0.845
ENSLACG00000012763 Latimeria chalumnae ENSLACG00000012763 I 0.845
NEMVEDRAFT_v1g208034 Nematostella vectensis NEMVEDRAFT_v1g208034 I 0.843
nkx3.3 Gasterosteus aculeatus ENSGACG00000007573 I 0.843
KGM_11246 Danaus plexippus KGM_11246 I 0.839
HMEL006181 Heliconius melpomene HMEL006181 I 0.839
MCINX004875 Melitaea cinxia MCINX004875 I 0.839
BGIBMGA010706 Bombyx mori BGIBMGA010706 I 0.839
ACYPI002893 Acyrthosiphon pisum ACYPI002893 I 0.839
ISCW014989 Ixodes scapularis ISCW014989 I 0.838
HelroG148616 Helobdella robusta HelroG148616 I 0.837
ASTEI07437 Anopheles stephensi ASTEI07437 I 0.837
AMEM005009 Anopheles merus AMEM005009 I 0.837
AQUA001538 Anopheles quadriannulatus AQUA001538 I 0.837
MESCA006298 Megaselia scalaris MESCA006298 I 0.837
AARA010121 Anopheles arabiensis AARA010121 I 0.837
MDOA010758 Musca domestica MDOA010758 I 0.837
CPIJ004109 Culex quinquefasciatus CPIJ004109 I 0.837
ADAC003526 Anopheles darlingi ADAC003526 I 0.837
AAEL006597 Aedes aegypti AAEL006597 I 0.837
LCUP000733 Lucilia cuprina LCUP000733 I 0.837
AGAP003671 Anopheles gambiae AGAP003671 I 0.837
AATE016309 Anopheles atroparvus AATE016309 I 0.837
PPAI010327 Phlebotomus papatasi PPAI010327 I 0.837
ASIS007650 Anopheles sinensis ASIS007650 I 0.837
AFUN008966 Anopheles funestus AFUN008966 I 0.837
CpipJ_CPIJ004109 Culex pipiens CpipJ_CPIJ004109 I 0.837
ACHR006588 Anopheles christyi ACHR006588 I 0.837
ADIR005347 Anopheles dirus ADIR005347 I 0.837
AFAF013479 Anopheles farauti AFAF013479 I 0.837
AEPI001627 Anopheles epiroticus AEPI001627 I 0.837
AMIN004031 Anopheles minimus AMIN004031 I 0.837
AMAM011860 Anopheles maculatus AMAM011860 I 0.837
AMEC017317 Anopheles melas AMEC017317 I 0.837
ACUA019412 Anopheles culicifacies ACUA019412 I 0.837
ACOM028774 Anopheles coluzzii ACOM028774 I 0.837
ENSNLEG00000016256 Nomascus leucogenys ENSNLEG00000016256 I 0.835
NKX3-2 Oryctolagus cuniculus ENSOCUG00000009039 I 0.835
ENSOPRG00000005452 Ochotona princeps ENSOPRG00000005452 I 0.835
nkx3.2 Oryzias latipes ENSORLG00000000593 I 0.835
NKX3-2 Otolemur garnettii ENSOGAG00000015615 I 0.835
Alligator_sinensis_CCG000534.1 Alligator sinensis Alligator_sinensis_CCG000534.1 I 0.835
ENSSTOG00000021803 Ictidomys tridecemlineatus ENSSTOG00000021803 I 0.835
ENSONIG00000002379 Oreochromis niloticus ENSONIG00000002379 I 0.835
nkx3.2 Takifugu rubripes ENSTRUG00000014438 I 0.835
Nkx3-2 Rattus norvegicus ENSRNOG00000060782 I 0.835
ENSPSIG00000012169 Pelodiscus sinensis ENSPSIG00000012169 I 0.835
Pvit_15821 Pogona vitticeps Pvit_15821 I 0.835
ENSPTRG00000031253 Pan troglodytes ENSPTRG00000031253 I 0.835
NKX3-2 Pteropus vampyrus ENSPVAG00000002830 I 0.835
ENSPPYG00000014611 Pongo abelii ENSPPYG00000014611 I 0.835
ENSPFOG00000002882 Poecilia formosa ENSPFOG00000002882 I 0.835
ENSXMAG00000016282 Xiphophorus maculatus ENSXMAG00000016282 I 0.835
ENSTTRG00000003623 Tursiops truncatus ENSTTRG00000003623 I 0.835
ENSPANG00000021310 Papio anubis ENSPANG00000021310 I 0.835
NKX3-2 Procavia capensis ENSPCAG00000013077 I 0.835
ENSSSCG00000024594 Sus scrofa ENSSSCG00000024594 I 0.835
ENSMMUG00000022026 Macaca mulatta ENSMMUG00000022026 I 0.835
ENSGMOG00000018725 Gadus morhua ENSGMOG00000018725 I 0.835
nkx3-1 Danio rerio ENSDARG00000078280 I 0.835
ENSLACG00000003608 Latimeria chalumnae ENSLACG00000003608 I 0.835
NKX3-2 Loxodonta africana ENSLAFG00000031404 I 0.835
ENSLOCG00000009892 Lepisosteus oculatus ENSLOCG00000009892 I 0.835
NKX3-2 Dasypus novemcinctus ENSDNOG00000043074 I 0.835
ENSEEUG00000012691 Erinaceus europaeus ENSEEUG00000012691 I 0.835
nkx3-2 Xenopus tropicalis XB-GENE-876834 I 0.835
NKX3-2 Homo sapiens ENSG00000109705 D 0.835
nkx3.2 Gasterosteus aculeatus ENSGACG00000016378 I 0.835
NKX3-2 Gorilla gorilla ENSGGOG00000008589 I 0.835
Nkx3-2 Mus musculus ENSMUSG00000049691 D 0.835
nkx3.2 Danio rerio ENSDARG00000037639 I 0.835
ENSMICG00000000190 Microcebus murinus ENSMICG00000000190 I 0.835
Ocbimv22026957m.g Octopus bimaculoides Ocbimv22026957m.g I 0.835
NKX3-2 Canis familiaris ENSCAFG00000015412 I 0.835
NKX3-2 Bos taurus ENSBTAG00000010896 I 0.835
ENSAMXG00000003840 Astyanax mexicanus ENSAMXG00000003840 I 0.835
ENSAMEG00000009342 Ailuropoda melanoleuca ENSAMEG00000009342 I 0.835
ENSMPUG00000000476 Mustela putorius furo ENSMPUG00000000476 I 0.835
NKX3-2 Monodelphis domestica ENSMODG00000024753 I 0.835
NKX3-2 Myotis lucifugus ENSMLUG00000008362 I 0.835
ENSCSAG00000016338 Chlorocebus sabaeus ENSCSAG00000016338 I 0.835
NKX3-2 Cavia porcellus ENSCPOG00000005449 I 0.835
NKX3-2 Callithrix jacchus ENSCJAG00000012159 I 0.835
nkx3-2.S Xenopus laevis XB-GENE-876836 I 0.835
nkx3-3.S Xenopus laevis XB-GENE-865322 I 0.834
GH22032 Drosophila grimshawi FBgn0129493 I 0.833
bap Drosophila melanogaster FBgn0004862 D 0.833
GJ14311 Drosophila virilis FBgn0201526 I 0.833
GK14503 Drosophila willistoni FBgn0216509 I 0.833
GI21951 Drosophila mojavensis FBgn0144680 I 0.833
GL27337 Drosophila persimilis FBgn0164918 I 0.833
bap Drosophila sechellia FBgn0067536 I 0.833
GA20672 Drosophila pseudoobscura FBgn0080666 I 0.833
tetur04g08350 Tetranychus urticae tetur04g08350 I 0.833
GE25732 Drosophila yakuba FBgn0242790 I 0.833
bap Drosophila simulans FBgn0067504 I 0.833
GG24598 Drosophila erecta FBgn0116730 I 0.833
GF18600 Drosophila ananassae FBgn0095618 I 0.833
LotgiG60615 Lottia gigantea LotgiG60615 I 0.832
RPRC001122 Rhodnius prolixus RPRC001122 I 0.830
CLEC002956 Cimex lectularius CLEC002956 I 0.830
ACEP23863 Atta cephalotes ACEP23863 I 0.829
NV25828 Nasonia vitripennis NV25828 I 0.829
Hsal_06436--XP_001120208.1_APIME Harpegnathos saltator Hsal_06436--XP_001120208.1_APIME I 0.829
GB47401 Apis mellifera GB47401 I 0.829
SINV22315 Solenopsis invicta SINV22315 I 0.829
CapteG79432 Capitella teleta CapteG79432 I 0.826
ENSCING00000007395 Ciona intestinalis ENSCING00000007395 D 0.826
nkx3.2 Tetraodon nigroviridis ENSTNIG00000015732 I 0.825
XP_002932598 Xenopus tropicalis XP_002932598 I 0.820
Myotis_brandtii_NKX3_10014306 Myotis brandtii Myotis_brandtii_NKX3_10014306 I 0.820
ENSP00000370253 Macaca fascicularis ENSP00000370253 I 0.820
ENSBTAP00000001615-D1 Bos grunniens ENSBTAP00000001615-D1 I 0.820
nkx3-1.L Xenopus laevis XB-GENE-479031 I 0.820
nkx3-1.S Xenopus laevis XB-GENE-6252708 I 0.820
ENSSARG00000001895 Sorex araneus ENSSARG00000001895 I 0.820
ENSNLEG00000015968 Nomascus leucogenys ENSNLEG00000015968 I 0.820
Nkx3-1 Mus musculus ENSMUSG00000022061 D 0.820
ENSMPUG00000003418 Mustela putorius furo ENSMPUG00000003418 I 0.820
NKX3-1 Monodelphis domestica ENSMODG00000016789 I 0.820
NKX3-1 Ornithorhynchus anatinus ENSOANG00000008027 I 0.820
ENSOARG00000010071 Ovis aries ENSOARG00000010071 I 0.820
ENSECAG00000001509 Equus caballus ENSECAG00000001509 I 0.820
NKX3-1 Otolemur garnettii ENSOGAG00000001303 I 0.820
NKX3-1 Oryctolagus cuniculus ENSOCUG00000004294 I 0.820
NKX3-1 Macaca mulatta ENSMMUG00000009796 I 0.820
NKX3-1 Myotis lucifugus ENSMLUG00000006118 I 0.820
NKX3-1 Homo sapiens ENSG00000167034 D 0.820
NKX3-1 Dasypus novemcinctus ENSDNOG00000044451 I 0.820
NKX3-1 Echinops telfairi ENSETEG00000018790 I 0.820
NKX3-1 Erinaceus europaeus ENSEEUG00000001113 I 0.820
NKX3-1 Gorilla gorilla ENSGGOG00000014369 I 0.820
ENSCSAG00000016229 Chlorocebus sabaeus ENSCSAG00000016229 I 0.820
NKX3-1 Microcebus murinus ENSMICG00000011189 I 0.820
ENSCPOG00000010557 Cavia porcellus ENSCPOG00000010557 I 0.820
NKX3-1 Loxodonta africana ENSLAFG00000008941 I 0.820
ENSCHOG00000011132 Choloepus hoffmanni ENSCHOG00000011132 I 0.820
NKX3-1 Callithrix jacchus ENSCJAG00000020092 I 0.820
ENSSSCG00000028216 Sus scrofa ENSSSCG00000028216 I 0.820
ENSSHAG00000015475 Sarcophilus harrisii ENSSHAG00000015475 I 0.820
Nkx3-1 Rattus norvegicus ENSRNOG00000015477 I 0.820
ENSCAFG00000009107 Canis familiaris ENSCAFG00000009107 I 0.820
ENSTBEG00000002319 Tupaia belangeri ENSTBEG00000002319 I 0.820
ENSTSYG00000007109 Tarsius syrichta ENSTSYG00000007109 I 0.820
NKX3-1 Vicugna pacos ENSVPAG00000004503 I 0.820
ENSACAG00000026683 Anolis carolinensis ENSACAG00000026683 I 0.820
ENSAMEG00000002866 Ailuropoda melanoleuca ENSAMEG00000002866 I 0.820
NKX3-1 Pan troglodytes ENSPTRG00000020081 I 0.820
NKX3-1 Pteropus vampyrus ENSPVAG00000005378 I 0.820
ENSPSIG00000017342 Pelodiscus sinensis ENSPSIG00000017342 I 0.820
NKX3-1 Bos taurus ENSBTAG00000001221 I 0.820
NKX3-1 Ochotona princeps ENSOPRG00000003179 I 0.820
ENSPCAG00000016644 Procavia capensis ENSPCAG00000016644 I 0.820
ENSPANG00000004934 Papio anubis ENSPANG00000004934 I 0.820
ENSPPYG00000018442 Pongo abelii ENSPPYG00000018442 I 0.820
ENSP00000371875 Macaca fascicularis ENSP00000371875 I 0.819
ENSAMXG00000024837 Astyanax mexicanus ENSAMXG00000024837 I 0.818
ENSFALG00000011121 Ficedula albicollis ENSFALG00000011121 I 0.818
ENSAPLG00000014690 Anas platyrhynchos ENSAPLG00000014690 I 0.818
ENSLOCG00000015015 Lepisosteus oculatus ENSLOCG00000015015 I 0.818
ENSXMAG00000020262 Xiphophorus maculatus ENSXMAG00000020262 I 0.818
ENSPFOG00000009654 Poecilia formosa ENSPFOG00000009654 I 0.818
nkx3-1 Gasterosteus aculeatus ENSGACG00000010776 I 0.817
nkx3-1 Oryzias latipes ENSORLG00000010925 I 0.817
ENSGMOG00000005518 Gadus morhua ENSGMOG00000005518 I 0.817
ENSONIG00000011762 Oreochromis niloticus ENSONIG00000011762 I 0.817
PXEA_0003190801 Protopolystoma xenopodis PXEA_0003190801 I 0.799
SMU15003549 Schmidtea mediterranea SMU15003549 I 0.798
csin109461 Clonorchis sinensis csin109461 I 0.793
SMRZ_0000016501 Schistosoma margrebowiei SMRZ_0000016501 I 0.792
SMTD_0000549701 Schistosoma mattheei SMTD_0000549701 I 0.792
Smp_140730 Schistosoma mansoni Smp_140730 I 0.792
A_02450 Schistosoma haematobium A_02450 I 0.792
BGLB010692 Biomphalaria glabrata BGLB010692 I 0.790
TCLT_0000478201 Thelazia callipaeda TCLT_0000478201 I 0.724
ENSONIG00000018347 Oreochromis niloticus ENSONIG00000018347 I 0.708
Aan_R009530 Calypte anna Aan_R009530 I 0.701
D915_02578 Fasciola hepatica D915_02578 I 0.695
ENSTTRG00000012332 Tursiops truncatus ENSTTRG00000012332 I 0.681
MCOS_0000074801 Mesocestoides corti MCOS_0000074801 I 0.662
HelroG138724 Helobdella robusta HelroG138724 I 0.653
ENSAMXG00000009415 Astyanax mexicanus ENSAMXG00000009415 I 0.631
EmuJ_000895600 Echinococcus multilocularis EmuJ_000895600 I 0.625
TsM_000540100 Taenia solium TsM_000540100 I 0.625
ECANG7_00763 Echinococcus canadensis ECANG7_00763 I 0.625
TTAC_0000184701 Hydatigera taeniaeformis TTAC_0000184701 I 0.625
TASK_0000475201 Taenia asiatica TASK_0000475201 I 0.625
TTRE_0000463801 Trichuris trichiura TTRE_0000463801 I 0.614
L893_g18140 Steinernema glaseri L893_g18140 I 0.614
D918_06873 Trichuris suis D918_06873 I 0.614
ASIM_0001224701 Anisakis simplex ASIM_0001224701 I 0.612
BTMF_0000772101 Brugia timori BTMF_0000772101 I 0.611
nLs.2.1.2.g07743 Litomosoides sigmodontis nLs.2.1.2.g07743 I 0.609
NKX2-6 Canis familiaris ENSCAFG00000024691 I 0.606
NKX2-6 Pteropus vampyrus ENSPVAG00000005380 I 0.606
NKX2-6 Equus caballus ENSECAG00000013714 I 0.606
hlx Ciona intestinalis ENSCING00000019191 I 0.600
Minc11316 Meloidogyne incognita Minc11316 I 0.599