CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Afo_R006606
(
Aptenodytes forsteri
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Afo_R006606
T225085_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hoxb8
M00517_2.00
Mus musculus
NWWAYNDNN
NNHNRTWWN
PBM
Berger et al.(2008)
Hoxb8_3780
0.643
0.965
HOXB8
M05048_2.00
Homo sapiens
NTAATKRM
KYMATTAN
SELEX
Yin et al.(2017)
HOXB8_eDBD_HT-SELEX
0.643
0.965
HOXB8
M09141_2.00
Homo sapiens
BMATHAATCAA
TTGATTDATKV
Misc
Kulakovskiy et al.(2013)
HXB8_HUMAN.H11MO.0.C
0.643
0.965
Hoxb8
M09214_2.00
Mus musculus
BMATHAATCAA
TTGATTDATKV
Misc
Kulakovskiy et al.(2013)
HXB8_MOUSE.H11MO.0.C
0.643
0.965
HOXB8
M05049_2.00
Homo sapiens
NTAATKRN
NYMATTAN
SELEX
Yin et al.(2017)
HOXB8_eDBD_Methyl-HT-SELEX_1
0.643
0.965
HOXB8
M05050_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXB8_eDBD_Methyl-HT-SELEX_2
0.643
0.965
HOXD8
M03221_2.00
Homo sapiens
VHWAATKWDN
NHWMATTWDB
SELEX
Jolma et al.(2013)
HOXD8_1
0.642
0.930
HOXD8
M05310_2.00
Homo sapiens
BTAATKRY
RYMATTAV
SELEX
Yin et al.(2017)
HOXD8_eDBD_HT-SELEX
0.642
0.930
HOXD8
M05311_2.00
Homo sapiens
NTAATKRN
NYMATTAN
SELEX
Yin et al.(2017)
HOXD8_eDBD_Methyl-HT-SELEX_1
0.642
0.930
HOXD8
M05312_2.00
Homo sapiens
NTWAYGRY
RYCRTWAN
SELEX
Yin et al.(2017)
HOXD8_eDBD_Methyl-HT-SELEX_2
0.642
0.930
Hoxd8
M00436_2.00
Mus musculus
NNWWYNNN
NNNRWWNN
PBM
Berger et al.(2008)
Hoxd8_2644
0.630
0.912
Hoxa6
M00494_2.00
Mus musculus
NWWATKRNN
NNYMATWWN
PBM
Berger et al.(2008)
Hoxa6_1040
0.630
0.807
HOXA6
M04974_2.00
Homo sapiens
NNTAATKRVN
NBYMATTANN
SELEX
Yin et al.(2017)
HOXA6_eDBD_HT-SELEX
0.630
0.807
HOXA6
M04975_2.00
Homo sapiens
NNTAATKRBN
NVYMATTANN
SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_1
0.630
0.807
HOXA6
M04976_2.00
Homo sapiens
NTAAYGRY
RYCRTTAN
SELEX
Yin et al.(2017)
HOXA6_eDBD_Methyl-HT-SELEX_2
0.630
0.807
Hoxb6
M00381_2.00
Mus musculus
NNDHNNN
NNNDHNN
PBM
Berger et al.(2008)
Hoxb6_3428
0.625
0.807
HOXB6
M04999_2.00
Homo sapiens
NTAATKRY
RYMATTAN
SELEX
Yin et al.(2017)
HOXB6_eDBD_HT-SELEX
0.625
0.807
HOXB6
M05000_2.00
Homo sapiens
HTAAYGAY
RTCRTTAD
SELEX
Yin et al.(2017)
HOXB6_eDBD_Methyl-HT-SELEX_1
0.625
0.807
HOXB6
M05001_2.00
Homo sapiens
NTWATKRB
VYMATWAN
SELEX
Yin et al.(2017)
HOXB6_eDBD_Methyl-HT-SELEX_2
0.625
0.807
Hoxc6
M00392_2.00
Mus musculus
TTAATTAB
VTAATTAA
PBM
Berger et al.(2008)
Hoxc6_3954
0.617
0.807
abd-A
M03770_2.00
Drosophila melanogaster
NNTAATKRCN
NGYMATTANN
SELEX
Nitta et al.(2015)
abd-A_1
0.614
0.789
abd-A
M03771_2.00
Drosophila melanogaster
NNTAATKRCN
NGYMATTANN
SELEX
Nitta et al.(2015)
abd-A_2
0.614
0.789
abd-A
M06475_2.00
Drosophila melanogaster
TTAATKA
TMATTAA
B1H
Mathelier et al.(2014)
MA0206.1
0.614
0.789
abd-A
M06210_2.00
Drosophila melanogaster
WTWATKDM
KHMATWAW
B1H
Zhu et al.(2011)
Abd-A_FlyReg_FBgn0000014
0.614
0.789
abd-A
M09671_2.00
Drosophila melanogaster
HTAATKRH
DYMATTAD
Misc
Kulakovskiy et al.(2009)
abd-A
0.614
0.789
abd-A
M10778_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$ABDA_Q6
0.614
0.789
Hoxc8
M00391_2.00
Mus musculus
NNDNYNNNN
NNNNRNHNN
PBM
Berger et al.(2008)
Hoxc8_3429
0.611
0.947
HOXC8
M04912_2.00
Homo sapiens
NYAATTRN
NYAATTRN
SELEX
Yin et al.(2017)
HOXC8_FL_HT-SELEX
0.611
0.947
HOXC8
M10636_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXC8_Q3
0.611
0.947
HOXC8
M04913_2.00
Homo sapiens
NYMATKRN
NYMATKRN
SELEX
Yin et al.(2017)
HOXC8_FL_Methyl-HT-SELEX_1
0.611
0.947
HOXC8
M04914_2.00
Homo sapiens
NTWAYGRY
RYCRTWAN
SELEX
Yin et al.(2017)
HOXC8_FL_Methyl-HT-SELEX_2
0.611
0.947
Ubx
M00558_2.00
Drosophila melanogaster
NWWAYDDNN
NNHHRTWWN
PBM
Busser et al.(2012a)
Ubx
0.609
0.789
Ubx
M03804_2.00
Drosophila melanogaster
NTAATKRH
DYMATTAN
SELEX
Nitta et al.(2015)
Ubx_1
0.609
0.789
Ubx
M06499_2.00
Drosophila melanogaster
NTTAATKR
YMATTAAN
B1H
Mathelier et al.(2014)
MA0094.2
0.609
0.789
Ubx
M06273_2.00
Drosophila melanogaster
NTTAATKR
YMATTAAN
B1H
Zhu et al.(2011)
Ubx_Cell_FBgn0003944
0.609
0.789
Ubx
M06274_2.00
Drosophila melanogaster
TAATKD
HMATTA
B1H
Zhu et al.(2011)
Ubx_FlyReg_FBgn0003944
0.609
0.789
Ubx
M06275_2.00
Drosophila melanogaster
NTTWATKR
YMATWAAN
B1H
Zhu et al.(2011)
Ubx_SOLEXA_FBgn0003944
0.609
0.789
Ubx
M09680_2.00
Drosophila melanogaster
TTAATKR
YMATTAA
Misc
Kulakovskiy et al.(2009)
Ubx
0.609
0.789
Ubx
M10788_2.00
Drosophila melanogaster
NNVNNNNTAATKRNBHNND
HNNDVNYMATTANNNNBNN
Transfac
Matys et al.(2006)
I$UBX_01
0.609
0.789
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Afo_R006606
Homeodomain
145
201
RRGGETYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKK
Links
Other
Homeodomain
family TFs
Other
Aptenodytes forsteri
TFs
444 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy