Alligator_sinensis_CCG010655.1 (Alligator sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Alligator_sinensis_CCG010655.1 T225224_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HOXD13
M00299_2.00
Homo sapiens
NTTWAYDDN

NHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_REF
0.867 1.000
Hoxd13
M00394_2.00
Mus musculus
NWTHRYDDN

NHHRYDAWN
PBM
Berger et al.(2008)
Hoxd13_2356
0.867 1.000
HOXD13
M03141_2.00
Homo sapiens
DTTTTATKRS

SYMATAAAAH
SELEX
Jolma et al.(2013)
HOXD13_1
0.867 1.000
HOXD13
M03142_2.00
Homo sapiens
BCTCGTAAAAH

DTTTTACGAGV
SELEX
Jolma et al.(2013)
HOXD13_2
0.867 1.000
Hoxd13
M03247_2.00
Mus musculus
DKTTTATTRS

SYAATAAAMH
SELEX
Jolma et al.(2013)
Hoxd13_1
0.867 1.000
Hoxd13
M03248_2.00
Mus musculus
DDTTTAYKAGN

NCTMRTAAAHH
SELEX
Jolma et al.(2013)
Hoxd13_2
0.867 1.000
HOXD13
M05122_2.00
Homo sapiens
GKTTTATKGSS

SSCMATAAAMC
SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_1
0.867 1.000
HOXD13
M05123_2.00
Homo sapiens
BCTCGTAAAMH

DKTTTACGAGV
SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_2
0.867 1.000
HOXD13
M10689_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD13_Q6
0.867 1.000
HOXD13
M05124_2.00
Homo sapiens
DDTTTATTRBB

VVYAATAAAHH
SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_1
0.867 1.000
HOXD13
M05125_2.00
Homo sapiens
VCTCGTAAAAH

DTTTTACGAGB
SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_2
0.867 1.000
HOXD13
M00295_2.00
Homo sapiens
NTTWAYDDN

NHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_N298S
0.867 0.982
HOXD13
M00300_2.00
Homo sapiens
WTTTATDR

YHATAAAW
PBM
Barrera et al.(2016)
HOXD13_S316C
0.867 0.982
HOXD13
M00293_2.00
Homo sapiens
NTTWAYDDNN

NNHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_I297V
0.866 0.982
HOXD13
M00298_2.00
Homo sapiens
NTTWAYDDN

NHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_R306W
0.859 0.982
HOXD13
M00294_2.00
Homo sapiens
THGTWAAW

WTTWACDA
PBM
Barrera et al.(2016)
HOXD13_I322L
0.849 0.982
hoxd13a
M02081_2.00
Danio rerio
WTTTATDR

YHATAAAW
PBM
Weirauch et al.(2014)
pTH6143
0.848 0.807
Hoxa13
M00473_2.00
Mus musculus
NTTWAYDRN

NYHRTWAAN
PBM
Berger et al.(2008)
Hoxa13_3126
0.834 0.895
HOXA13
M03098_2.00
Homo sapiens
DKTTTATKRS

SYMATAAAMH
SELEX
Jolma et al.(2013)
HOXA13_1
0.834 0.895
HOXA13
M03099_2.00
Homo sapiens
NCTCGTAAAHN

NDTTTACGAGN
SELEX
Jolma et al.(2013)
HOXA13_2
0.834 0.895
HOXA13
M03100_2.00
Homo sapiens
DKTTTATKRS

SYMATAAAMH
SELEX
Jolma et al.(2013)
HOXA13_3
0.834 0.895
HOXA13
M03101_2.00
Homo sapiens
NCTCGTAAAAH

DTTTTACGAGN
SELEX
Jolma et al.(2013)
HOXA13_4
0.834 0.895
HOXA13
M04977_2.00
Homo sapiens
DTTTTATKGGB

VCCMATAAAAH
SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_1
0.834 0.895
HOXA13
M04978_2.00
Homo sapiens
NCTCGTAAAHN

NDTTTACGAGN
SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_2
0.834 0.895
HOXA13
M04981_2.00
Homo sapiens
DTTTTATKRSN

NSYMATAAAAH
SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_1
0.834 0.895
HOXA13
M04982_2.00
Homo sapiens
NCTCGTAAAWH

DWTTTACGAGN
SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_2
0.834 0.895
HOXA13
M09134_2.00
Homo sapiens
VDTWTWATKGS

SCMATWAWAHB
Misc
Kulakovskiy et al.(2013)
HXA13_HUMAN.H11MO.0.C
0.834 0.895
Hoxa13
M09202_2.00
Mus musculus
VDTWTWATKGS

SCMATWAWAHB
Misc
Kulakovskiy et al.(2013)
HXA13_MOUSE.H11MO.0.C
0.834 0.895
HOXA13
M10653_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA13_01
0.834 0.895
HOXA13
M10654_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA13_02
0.834 0.895
HOXA13
M04979_2.00
Homo sapiens
DTTTTATTRSN

NSYAATAAAAH
SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_1
0.834 0.895
HOXA13
M04980_2.00
Homo sapiens
NCTCGTAAAHN

NDTTTACGAGN
SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_2
0.834 0.895
HOXA13
M04983_2.00
Homo sapiens
DKTTTATTGBN

NVCAATAAAMH
SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_1
0.834 0.895
HOXA13
M04984_2.00
Homo sapiens
NCTCGTAAAWH

DWTTTACGAGN
SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_2
0.834 0.895
Hoxc13
M00389_2.00
Mus musculus
NTTWAYDRNN

NNYHRTWAAN
PBM
Berger et al.(2008)
Hoxc13_3127
0.834 0.860
HOXC13
M03129_2.00
Homo sapiens
NTTTTATTRS

SYAATAAAAN
SELEX
Jolma et al.(2013)
HOXC13_1
0.834 0.860
HOXC13
M03130_2.00
Homo sapiens
NCTCGTAAAAH

DTTTTACGAGN
SELEX
Jolma et al.(2013)
HOXC13_2
0.834 0.860
HOXC13
M05072_2.00
Homo sapiens
RKTTTATKGSN

NSCMATAAAMY
SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_1
0.834 0.860
HOXC13
M05073_2.00
Homo sapiens
BCTCGTAAAMH

DKTTTACGAGV
SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_2
0.834 0.860
HOXC13
M10680_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXC13_Q2
0.834 0.860
HOXC13
M05074_2.00
Homo sapiens
BCTCGTAAAAH

DTTTTACGAGV
SELEX
Yin et al.(2017)
HOXC13_eDBD_Methyl-HT-SELEX
0.834 0.860
HOXB13
M02092_2.00
Homo sapiens
NTTWAYDDNN

NNHHRTWAAN
PBM
Weirauch et al.(2014)
pTH5808
0.704 0.807
Hoxb13
M00505_2.00
Mus musculus
NTTWAYDDNN

NNHHRTWAAN
PBM
Berger et al.(2008)
Hoxb13_3479
0.704 0.807
HOXB13
M03175_2.00
Homo sapiens
DTTTTATKGG

CCMATAAAAH
SELEX
Jolma et al.(2013)
HOXB13_1
0.704 0.807
HOXB13
M03176_2.00
Homo sapiens
BCTCGTAAAAH

DTTTTACGAGV
SELEX
Jolma et al.(2013)
HOXB13_2
0.704 0.807
HOXB13
M05201_2.00
Homo sapiens
DTTTTATKGGN

NCCMATAAAAH
SELEX
Yin et al.(2017)
HOXB13_eDBD_HT-SELEX_1
0.704 0.807
HOXB13
M05202_2.00
Homo sapiens
NCTCGTAAAHH

DDTTTACGAGN
SELEX
Yin et al.(2017)
HOXB13_eDBD_HT-SELEX_2
0.704 0.807
HOXB13
M09149_2.00
Homo sapiens
TTTTATDRSN

NSYHATAAAA
Misc
Kulakovskiy et al.(2013)
HXB13_HUMAN.H11MO.0.A
0.704 0.807
HOXB13
M05203_2.00
Homo sapiens
NCTCGTAAAAH

DTTTTACGAGN
SELEX
Yin et al.(2017)
HOXB13_eDBD_Methyl-HT-SELEX
0.704 0.807
HOXD13
M00296_2.00
Homo sapiens
GKATAAAH

DTTTATMC
PBM
Barrera et al.(2016)
HOXD13_Q325K
0.633 0.982
HOXD13
M00297_2.00
Homo sapiens
NWTWRKNNNN

NNNNMYWAWN
PBM
Barrera et al.(2016)
HOXD13_Q325R
0.633 0.982
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG010655.1 Homeodomain 110 166

Links

Other Homeodomain family TFs
Other Alligator sinensis TFs

Invalid Input OrderBy

266 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action