Alligator_sinensis_CCG021865.1 (Alligator sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Alligator_sinensis_CCG021865.1 T225295_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ara
M06518_2.00
Drosophila melanogaster
WWACA

TGTWW
B1H
Mathelier et al.(2014)
MA0210.1
0.808 0.860
caup
M06519_2.00
Drosophila melanogaster
WAACA

TGTTW
B1H
Mathelier et al.(2014)
MA0217.1
0.808 0.860
ara
M06313_2.00
Drosophila melanogaster
TGTWWWNN

NNWWWACA
B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904
0.808 0.860
ara
M06314_2.00
Drosophila melanogaster
DWWACA

TGTWWH
B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904
0.808 0.860
caup
M06315_2.00
Drosophila melanogaster
HWDWAACA

TGTTWHWD
B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919
0.808 0.860
caup
M06316_2.00
Drosophila melanogaster
NDDACA

TGTHHN
B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919
0.808 0.860
Irx2
M00386_2.00
Mus musculus
NNDACAHNN

NNDTGTHNN
PBM
Berger et al.(2008)
Irx2_0900
0.800 0.825
Irx5
M00455_2.00
Mus musculus
NNNDACAHN

NDTGTHNNN
PBM
Berger et al.(2008)
Irx5_2385
0.800 0.825
IRX2
M03212_2.00
Homo sapiens
NDACAYRACAHN

NDTGTYRTGTHN
SELEX
Jolma et al.(2013)
IRX2_1
0.800 0.825
IRX5
M03222_2.00
Homo sapiens
NDACAYRACAHN

NDTGTYRTGTHN
SELEX
Jolma et al.(2013)
IRX5_1
0.800 0.825
IRX5
M05315_2.00
Homo sapiens
NBDTGTHNDACAYVN

NBRTGTHNDACAHVN
SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX
0.800 0.825
IRX5
M05316_2.00
Homo sapiens
WYRYGHHNHAYRYRY

RYRYRTDNDDCRYRW
SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX
0.800 0.825
Irx4
M00416_2.00
Mus musculus
NNNDAMAH

DTKTHNNN
PBM
Berger et al.(2008)
Irx4_2242
0.789 0.877
Irx6
M00456_2.00
Mus musculus
NNDAHWN

NWDTHNN
PBM
Berger et al.(2008)
Irx6_2623
0.777 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG021865.1 Homeodomain 155 214

Links

Other Homeodomain family TFs
Other Alligator sinensis TFs

387 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGHDH14_bgh01862 Blumeria graminis BGHDH14_bgh01862 I 0.000
estExt_fgenesh3_pm.C_40367 Neurospora discreta estExt_fgenesh3_pm.C_40367 I 0.000
F503_02770 Ophiostoma piceae uamh F503_02770 I 0.000
FGRRES_00404 Fusarium graminearum FGRRES_00404 I 0.000
FPSE_00066 Fusarium pseudograminearum FPSE_00066 I 0.000
GGTG_01235 Gaeumannomyces graminis GGTG_01235 I 0.000
HMPREF1624_07644 Sporothrix schenckii HMPREF1624_07644 I 0.000
MYCTH_2297073 Myceliophthora thermophila MYCTH_2297073 I 0.000
NCU07374 Neurospora crassa NCU07374 D 0.000
NEUTE1DRAFT_125788 Neurospora tetrasperma NEUTE1DRAFT_125788 I 0.000
OIDMADRAFT_173784 Oidiodendron maius OIDMADRAFT_173784 I 0.000
PODANS_1_17930 Podospora anserina PODANS_1_17930 I 0.000
SMAC_00325 Sordaria macrospora SMAC_00325 I 0.000
SPBR_06814 Sporothrix brasiliensis SPBR_06814 I 0.000
THITE_2112545 Thielavia terrestris THITE_2112545 I 0.000