Cmyd_10004252 (Chelonia mydas)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cmyd_10004252 T225662_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
VSX1
M03087_2.00
Homo sapiens
YTAATTAN

NTAATTAR
SELEX
Jolma et al.(2013)
VSX1_1
0.744 0.395
VSX1
M03088_2.00
Homo sapiens
NNYAATTRRBN

NVYYAATTRNN
SELEX
Jolma et al.(2013)
VSX1_2
0.744 0.395
VSX1
M04941_2.00
Homo sapiens
YYAATTRN

NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX
0.744 0.395
VSX1
M04944_2.00
Homo sapiens
NTAATTRS

SYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX
0.744 0.395
VSX1
M05869_2.00
Homo sapiens
DGCTAATTAN

NTAATTAGCH
SMiLE-seq
Isakova et al.(2017)
VSX1
0.744 0.395
VSX1
M04942_2.00
Homo sapiens
NTAAYGMN

NKCRTTAN
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1
0.744 0.395
VSX1
M04943_2.00
Homo sapiens
YYAATTRN

NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2
0.744 0.395
VSX1
M04945_2.00
Homo sapiens
NTAATTRG

CYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1
0.744 0.395
VSX1
M04946_2.00
Homo sapiens
NTAAYGAN

NTCRTTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2
0.744 0.395
VAX1
M03168_2.00
Homo sapiens
YTAATKAN

NTMATTAR
SELEX
Jolma et al.(2013)
VAX1_1
0.737 0.442
VAX1
M05182_2.00
Homo sapiens
BTAATTRN

NYAATTAV
SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX
0.737 0.442
VAX1
M05183_2.00
Homo sapiens
BTMATKRN

NYMATKAV
SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX
0.737 0.442
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10004252 Homeodomain 75 117

Links

Other Homeodomain family TFs
Other Chelonia mydas TFs

1270 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000011905 Ailuropoda melanoleuca ENSAMEG00000011905 I 0.000
ENSAMEG00000016060 Ailuropoda melanoleuca ENSAMEG00000016060 I 0.000
Alligator_sinensis_CCG021907.1 Alligator sinensis Alligator_sinensis_CCG021907.1 I 0.000
BHLHE41 Anolis carolinensis ENSACAG00000000432 I 0.000
BHLHE40 Anolis carolinensis ENSACAG00000012577 I 0.000
Afo_R006295 Aptenodytes forsteri Afo_R006295 I 0.000
ENSAMXG00000020366 Astyanax mexicanus ENSAMXG00000020366 I 0.000
ENSAMXG00000007020 Astyanax mexicanus ENSAMXG00000007020 I 0.000
ENSBTAP00000040772-D1 Bos grunniens ENSBTAP00000040772-D1 I 0.000
ENSP00000256495-D1 Bos grunniens ENSP00000256495-D1 I 0.000
BHLHE40 Bos taurus ENSBTAG00000009863 I 0.000
BHLHE41 Bos taurus ENSBTAG00000030575 I 0.000
BHLHE40 Callithrix jacchus ENSCJAG00000015832 I 0.000
Aan_R007938 Calypte anna Aan_R007938 I 0.000
BHLHE40 Canis familiaris ENSCAFG00000005621 I 0.000
ENSCAFG00000031081 Canis familiaris ENSCAFG00000031081 I 0.000
ENSCPOG00000025122 Cavia porcellus ENSCPOG00000025122 I 0.000
Cmyd_10013769 Chelonia mydas Cmyd_10013769 I 0.000
Cmyd_10013122 Chelonia mydas Cmyd_10013122 I 0.000
ENSCSAG00000007728 Chlorocebus sabaeus ENSCSAG00000007728 I 0.000
ENSCSAG00000010905 Chlorocebus sabaeus ENSCSAG00000010905 I 0.000
bhlhe40 Danio rerio ENSDARG00000004060 I 0.000
bhlhe41 Danio rerio ENSDARG00000041691 I 0.000
BHLHE40 Dasypus novemcinctus ENSDNOG00000035717 I 0.000
BHLHE41 Echinops telfairi ENSETEG00000017468 I 0.000
BHLHE40 Equus caballus ENSECAG00000015069 I 0.000
ENSECAG00000000494 Equus caballus ENSECAG00000000494 I 0.000
ENSFCAG00000022143 Felis catus ENSFCAG00000022143 I 0.000
BHLHE40 Felis catus ENSFCAG00000002966 I 0.000
ENSFALG00000003877 Ficedula albicollis ENSFALG00000003877 I 0.000
ENSFALG00000013572 Ficedula albicollis ENSFALG00000013572 I 0.000
ENSGMOG00000002353 Gadus morhua ENSGMOG00000002353 I 0.000
ENSGMOG00000003444 Gadus morhua ENSGMOG00000003444 I 0.000
ENSGMOG00000004494 Gadus morhua ENSGMOG00000004494 I 0.000
BHLHE40 Gallus gallus ENSGALG00000008308 I 0.000
BHLHE40 Gasterosteus aculeatus ENSGACG00000000659 I 0.000
bhlhe41 Gasterosteus aculeatus ENSGACG00000011684 I 0.000
bhlhe40 Gasterosteus aculeatus ENSGACG00000011940 I 0.000
Gfo_R015175 Geospiza fortis Gfo_R015175 I 0.000
BHLHE41 Gorilla gorilla ENSGGOG00000015498 I 0.000
BHLHE40 Gorilla gorilla ENSGGOG00000015864 I 0.000
BHLHE41 Homo sapiens ENSG00000123095 D 0.000
BHLHE40 Homo sapiens ENSG00000134107 D 0.000
ENSSTOG00000000793 Ictidomys tridecemlineatus ENSSTOG00000000793 I 0.000
ENSSTOG00000021007 Ictidomys tridecemlineatus ENSSTOG00000021007 I 0.000
ENSLACG00000013163 Latimeria chalumnae ENSLACG00000013163 I 0.000
ENSLOCG00000010962 Lepisosteus oculatus ENSLOCG00000010962 I 0.000
ENSLOCG00000015327 Lepisosteus oculatus ENSLOCG00000015327 I 0.000
BHLHE41 Loxodonta africana ENSLAFG00000030711 I 0.000
BHLHE40 Loxodonta africana ENSLAFG00000004896 I 0.000
ENSMMUP00000024507 Macaca fascicularis ENSMMUP00000024507 I 0.000
ENSP00000256495 Macaca fascicularis ENSP00000256495 I 0.000
ENSMMUG00000018629 Macaca mulatta ENSMMUG00000018629 I 0.000
ENSMMUG00000014588 Macaca mulatta ENSMMUG00000014588 I 0.000
ENSMEUG00000013058 Macropus eugenii ENSMEUG00000013058 I 0.000
ENSMEUG00000010801 Macropus eugenii ENSMEUG00000010801 I 0.000
BHLHE41 Monodelphis domestica ENSMODG00000016551 I 0.000
BHLHE40 Monodelphis domestica ENSMODG00000004516 I 0.000
ENSMPUG00000017029 Mustela putorius furo ENSMPUG00000017029 I 0.000
ENSMPUG00000010346 Mustela putorius furo ENSMPUG00000010346 I 0.000
Bhlhe40 Mus musculus ENSMUSG00000030103 D 0.000
Bhlhe41 Mus musculus ENSMUSG00000030256 D 0.000
Myotis_brandtii_BHLHE41_10027341 Myotis brandtii Myotis_brandtii_BHLHE41_10027341 I 0.000
Myotis_brandtii_BHLHE40_10019553 Myotis brandtii Myotis_brandtii_BHLHE40_10019553 I 0.000
BHLHE41 Myotis lucifugus ENSMLUG00000028371 I 0.000
ENSNLEG00000026535 Nomascus leucogenys ENSNLEG00000026535 I 0.000
ENSNLEG00000003704 Nomascus leucogenys ENSNLEG00000003704 I 0.000
ENSNLEG00000005307 Nomascus leucogenys ENSNLEG00000005307 I 0.000
ENSOPRG00000009637 Ochotona princeps ENSOPRG00000009637 I 0.000
ENSONIG00000014711 Oreochromis niloticus ENSONIG00000014711 I 0.000
ENSONIG00000019148 Oreochromis niloticus ENSONIG00000019148 I 0.000
ENSONIG00000020277 Oreochromis niloticus ENSONIG00000020277 I 0.000
BHLHE40 Ornithorhynchus anatinus ENSOANG00000003764 I 0.000
BHLHE40 Oryctolagus cuniculus ENSOCUG00000015177 I 0.000
dec1b Oryzias latipes ENSORLG00000014397 I 0.000
dec1a Oryzias latipes ENSORLG00000012739 I 0.000
bhlhe41 Oryzias latipes ENSORLG00000011401 I 0.000
BHLHE40 Otolemur garnettii ENSOGAG00000029762 I 0.000
ENSOGAG00000032001 Otolemur garnettii ENSOGAG00000032001 I 0.000
ENSOARG00000007840 Ovis aries ENSOARG00000007840 I 0.000
ENSOARG00000019968 Ovis aries ENSOARG00000019968 I 0.000
BHLHE41 Pan troglodytes ENSPTRG00000004779 I 0.000
BHLHE40 Pan troglodytes ENSPTRG00000014571 I 0.000
ENSPANG00000008563 Papio anubis ENSPANG00000008563 I 0.000
ENSPANG00000006688 Papio anubis ENSPANG00000006688 I 0.000
ENSPSIG00000016504 Pelodiscus sinensis ENSPSIG00000016504 I 0.000
ENSPSIG00000018157 Pelodiscus sinensis ENSPSIG00000018157 I 0.000
ENSPMAG00000003684 Petromyzon marinus ENSPMAG00000003684 I 0.000
ENSPFOG00000004275 Poecilia formosa ENSPFOG00000004275 I 0.000
ENSPFOG00000007800 Poecilia formosa ENSPFOG00000007800 I 0.000
ENSPFOG00000015542 Poecilia formosa ENSPFOG00000015542 I 0.000
Pvit_15832 Pogona vitticeps Pvit_15832 I 0.000
Pvit_19380 Pogona vitticeps Pvit_19380 I 0.000
ENSPPYG00000004372 Pongo abelii ENSPPYG00000004372 I 0.000
ENSPPYG00000013696 Pongo abelii ENSPPYG00000013696 I 0.000
BHLHE41 Pteropus vampyrus ENSPVAG00000004507 I 0.000
BHLHE40 Pteropus vampyrus ENSPVAG00000007723 I 0.000
Bhlhe40 Rattus norvegicus ENSRNOG00000007152 I 0.000
Bhlhe41 Rattus norvegicus ENSRNOG00000048961 I 0.000
BHLHE41 Sus scrofa ENSSSCG00000028552 I 0.000
ENSSSCG00000011534 Sus scrofa ENSSSCG00000011534 I 0.000
ENSTGUG00000012230 Taeniopygia guttata ENSTGUG00000012230 I 0.000
bhlhe41 Takifugu rubripes ENSTRUG00000005639 I 0.000
BHLHE40 Takifugu rubripes ENSTRUG00000011390 I 0.000
bhlhe40 Takifugu rubripes ENSTRUG00000014524 I 0.000
ENSTSYG00000002535 Tarsius syrichta ENSTSYG00000002535 I 0.000
bhlhe41 Tetraodon nigroviridis ENSTNIG00000012152 I 0.000
bhlhe40 Tetraodon nigroviridis ENSTNIG00000007338 I 0.000
BHLHE40 Tursiops truncatus ENSTTRG00000002786 I 0.000
BHLHE41 Tursiops truncatus ENSTTRG00000014501 I 0.000
bhlhe40.S Xenopus laevis XB-GENE-17337587 I 0.000
bhlhe40.L Xenopus laevis XB-GENE-865608 I 0.000
bhlhe40 Xenopus tropicalis XB-GENE-486416 I 0.000
bhlhe41 Xenopus tropicalis XB-GENE-994875 I 0.000
ENSXMAG00000008981 Xiphophorus maculatus ENSXMAG00000008981 I 0.000
ENSXMAG00000001113 Xiphophorus maculatus ENSXMAG00000001113 I 0.000
ENSXMAG00000002248 Xiphophorus maculatus ENSXMAG00000002248 I 0.000