Cmyd_10017639 (Chelonia mydas)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cmyd_10017639 T225786_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PITX2
M00313_2.00
Homo sapiens
NWAAKHYN

NRDMTTWN
PBM
Barrera et al.(2016)
PITX2_REF
0.471 1.000
Pitx3
M00428_2.00
Mus musculus
NTAAKCYN

NRGMTTAN
PBM
Berger et al.(2008)
Pitx3_3497
0.471 1.000
Pitx2
M00440_2.00
Mus musculus
NTAATCCN

NGGATTAN
PBM
Berger et al.(2008)
Pitx2_2274
0.471 1.000
PITX3
M03111_2.00
Homo sapiens
NHTAATCCN

NGGATTADN
SELEX
Jolma et al.(2013)
PITX3_1
0.471 1.000
PITX2
M05229_2.00
Homo sapiens
NTAAKCCN

NGGMTTAN
SELEX
Yin et al.(2017)
PITX2_eDBD_HT-SELEX
0.471 1.000
PITX2
M05231_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
PITX2_FL_HT-SELEX
0.471 1.000
PITX3
M04997_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
PITX3_eDBD_HT-SELEX
0.471 1.000
PITX2
M10720_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PITX2_Q2
0.471 1.000
PITX2
M10721_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PITX2_Q4
0.471 1.000
PITX2
M10722_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PITX2_Q6
0.471 1.000
PITX3
M10660_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PITX3_Q2
0.471 1.000
PITX3
M10661_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PITX3_Q3_01
0.471 1.000
PITX3
M10662_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PITX3_Q3
0.471 1.000
PITX2
M00310_2.00
Homo sapiens
HTAATCYN

NRGATTAD
PBM
Barrera et al.(2016)
PITX2_L100Q
0.471 1.000
PITX2
M00311_2.00
Homo sapiens
TTAATCCY

RGGATTAA
PBM
Barrera et al.(2016)
PITX2_R108H
0.471 1.000
PITX2
M00314_2.00
Homo sapiens
NTAATMYN

NRKATTAN
PBM
Barrera et al.(2016)
PITX2_T114P
0.471 1.000
PITX2
M05230_2.00
Homo sapiens
HTAATCCN

NGGATTAD
SELEX
Yin et al.(2017)
PITX2_eDBD_Methyl-HT-SELEX
0.471 1.000
PITX2
M05232_2.00
Homo sapiens
YTAATCCY

RGGATTAR
SELEX
Yin et al.(2017)
PITX2_FL_Methyl-HT-SELEX
0.471 1.000
PITX3
M04998_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
PITX3_eDBD_Methyl-HT-SELEX
0.471 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10017639 Homeodomain 1 31

Links

Other Homeodomain family TFs
Other Chelonia mydas TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGLB003577 Biomphalaria glabrata BGLB003577 N 0.000
BLOC1S6 Loxodonta africana ENSLAFG00000000655 N 0.000
BLOC1S6 Sorex araneus ENSSARG00000009861 N 0.000
Bra032973 Brassica rapa Bra032973 N 0.000
CAOG_03637 Capsaspora owczarzaki CAOG_03637 N 0.000
EFA80760.1 Polysphondylium pallidum EFA80760.1 N 0.000
fgenesh1_pg.C_scaffold_4001082 Cryphonectria parasitica fgenesh1_pg.C_scaffold_4001082 N 0.000
fgenesh2_pg.scaffold_12000136 Monosiga brevicollis fgenesh2_pg.scaffold_12000136 N 0.000
GE16904 Drosophila yakuba FBgn0234394 N 0.000
GF19613 Drosophila ananassae FBgn0096620 N 0.000
GK18872 Drosophila willistoni FBgn0220870 N 0.000
H311_00925 Anncaliia algerae H311_00925 N 0.000
Hsal_00106--NA Harpegnathos saltator Hsal_00106--NA N 0.000
JL09_g6305 Pichia kudriavzevii JL09_g6305 N 0.000
Lus10019949.g Linum usitatissimum Lus10019949.g N 0.000
Lus10042195.g Linum usitatissimum Lus10042195.g N 0.000
OLONG_002570 Oryza longistaminata OLONG_002570 I 0.000
ORUFI11G04600 Oryza rufipogon ORUFI11G04600 N 0.000
ORUFI12G05060 Oryza rufipogon ORUFI12G05060 N 0.000
Pavir.Fa00930 Panicum virgatum Pavir.Fa00930 N 0.000
PRUPE_ppa024046mg Prunus persica PRUPE_ppa024046mg N 0.000
PVAR5_0486 Byssochlamys spectabilis PVAR5_0486 N 0.000
Sec61g-ps1 Rattus norvegicus ENSRNOG00000049451 N 0.000
Sec61gl Rattus norvegicus ENSRNOG00000049016 N 0.000
TRIM56 Anolis carolinensis ENSACAG00000007859 N 0.000
TRIUR3_02266 Triticum urartu TRIUR3_02266 N 0.000
TRIUR3_03984 Triticum urartu TRIUR3_03984 N 0.000
ZBAI_00205 Zygosaccharomyces bailii ZBAI_00205 N 0.000