|
ENSBTAP00000019611-D1
(Bos grunniens)
Homeodomain
|
TF Information |
Pfam ID |
Interpro ID |
Gene ID |
CIS-BP ID |
Sequence source |
PF00046 (Homeobox) |
IPR001356 |
ENSBTAP00000019611-D1 |
T225861_2.00 |
GigaDB (2015-Oct-22) |
NCBI Gene Info:This gene encodes a tumor suppressor protein containing transcriptional activation, DNA binding, and oligomerization domains. The encoded protein responds to diverse cellular stresses to regulate expression of target genes, thereby inducing cell cycle arrest, apoptosis, senescence, DNA repair, or changes in metabolism. Mutations in this gene are associated with a variety of human cancers, including hereditary cancers such as Li-Fraumeni syndrome. Alternative splicing of this gene and the use of alternate promoters result in multiple transcript variants and isoforms. Additional isoforms have also been shown to result from the use of alternate translation initiation codons from identical transcript variants (PMIDs: 12032546, 20937277). [provided by RefSeq, Dec 2016] |
Directly determined binding motifs |
Name/Motif ID |
Species |
Forward |
Reverse |
Type/Study/Study ID |
SR Score |
DBD Identity |
No direct experiments |
|
|
|
|
|
Motifs from related TFs |
Name/Motif ID |
Species |
Forward |
Reverse |
Type/Study/Study ID |
SR Score |
DBD Identity |
Hoxa11
M00474_2.00 |
Mus musculus |
NNHNHNNNN |
NNNNDNDNN |
PBM
Berger et al.(2008)
Hoxa11_2218
|
0.867
|
1.000
|
Hoxa11
M03274_2.00 |
Mus musculus |
NNDTTWAYGABN |
NVTCRTWAAHNN |
SELEX
Jolma et al.(2013)
Hoxa11_1
|
0.867
|
1.000
|
Hoxa11
M03275_2.00 |
Mus musculus |
NDTTWATKRNN |
NNYMATWAAHN |
SELEX
Jolma et al.(2013)
Hoxa11_2
|
0.867
|
1.000
|
HOXA11
M04897_2.00 |
Homo sapiens |
VGTCGTAAAWH |
DWTTTACGACB |
SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_1
|
0.867
|
1.000
|
HOXA11
M04898_2.00 |
Homo sapiens |
DDTTWATKRSN |
NSYMATWAAHH |
SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_2
|
0.867
|
1.000
|
HOXA11
M04899_2.00 |
Homo sapiens |
NRTCGTAAAWH |
DWTTTACGAYN |
SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_1
|
0.867
|
1.000
|
HOXA11
M04900_2.00 |
Homo sapiens |
DYTTTATKRCH |
DGYMATAAARH |
SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_2
|
0.867
|
1.000
|
Hoxd11
M00493_2.00 |
Mus musculus |
DDDNNNNN |
NNNNNHHH |
PBM
Berger et al.(2008)
Hoxd11_3873
|
0.867
|
0.982
|
HOXD11
M03139_2.00 |
Homo sapiens |
RTCGTAAAWH |
DWTTTACGAY |
SELEX
Jolma et al.(2013)
HOXD11_1
|
0.867
|
0.982
|
HOXD11
M03140_2.00 |
Homo sapiens |
TTTWATKRBH |
DVYMATWAAA |
SELEX
Jolma et al.(2013)
HOXD11_2
|
0.867
|
0.982
|
HOXD11
M05120_2.00 |
Homo sapiens |
NRTCGTWAANNDTWAH |
DTWAHNNTTWACGAYN |
SELEX
Yin et al.(2017)
HOXD11_eDBD_HT-SELEX
|
0.867
|
0.982
|
HOXD11
M05121_2.00 |
Homo sapiens |
NRTCGTWAAHNDTWAH |
DTWAHNDTTWACGAYN |
SELEX
Yin et al.(2017)
HOXD11_eDBD_Methyl-HT-SELEX
|
0.867
|
0.982
|
Hoxc11
M00390_2.00 |
Mus musculus |
NTTWAYDDBN |
NVHHRTWAAN |
PBM
Berger et al.(2008)
Hoxc11_3718
|
0.867
|
0.947
|
HOXC11
M03131_2.00 |
Homo sapiens |
NWTTWAYGAYH |
DRTCRTWAAWN |
SELEX
Jolma et al.(2013)
HOXC11_1
|
0.867
|
0.947
|
HOXC11
M03132_2.00 |
Homo sapiens |
NWTTWATKRBH |
DVYMATWAAWN |
SELEX
Jolma et al.(2013)
HOXC11_2
|
0.867
|
0.947
|
HOXC11
M03133_2.00 |
Homo sapiens |
DRTCGTWAAWN |
NWTTWACGAYH |
SELEX
Jolma et al.(2013)
HOXC11_3
|
0.867
|
0.947
|
HOXC11
M03134_2.00 |
Homo sapiens |
NTTTTATKRBN |
NVYMATAAAAN |
SELEX
Jolma et al.(2013)
HOXC11_4
|
0.867
|
0.947
|
HOXC11
M05075_2.00 |
Homo sapiens |
NDTTWACGAYN |
NRTCGTWAAHN |
SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_1
|
0.867
|
0.947
|
HOXC11
M05076_2.00 |
Homo sapiens |
NWTTWATKRCH |
DGYMATWAAWN |
SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_2
|
0.867
|
0.947
|
HOXC11
M05079_2.00 |
Homo sapiens |
NRTCGTWAAHN |
NDTTWACGAYN |
SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_1
|
0.867
|
0.947
|
HOXC11
M05080_2.00 |
Homo sapiens |
NDTTWATKRSN |
NSYMATWAAHN |
SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_2
|
0.867
|
0.947
|
HOXC11
M05077_2.00 |
Homo sapiens |
NRTCGTAAAHN |
NDTTTACGAYN |
SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_1
|
0.867
|
0.947
|
HOXC11
M05078_2.00 |
Homo sapiens |
NDTTTATKRSN |
NSYMATAAAHN |
SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_2
|
0.867
|
0.947
|
HOXC11
M05081_2.00 |
Homo sapiens |
NRTCGTWAANN |
NNTTWACGAYN |
SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_1
|
0.867
|
0.947
|
HOXC11
M05082_2.00 |
Homo sapiens |
NNTTWAYKRSN |
NSYMRTWAANN |
SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_2
|
0.867
|
0.947
|
Hoxc10
M00421_2.00 |
Mus musculus |
TTWATKAB |
VTMATWAA |
PBM
Berger et al.(2008)
Hoxc10_2779
|
0.766
|
0.702
|
Hoxd10
M00509_2.00 |
Mus musculus |
NNNNNNNN |
NNNNNNNN |
PBM
Berger et al.(2008)
Hoxd10_2368
|
0.766
|
0.702
|
HOXC10
M03228_2.00 |
Homo sapiens |
DTTTWATKDB |
VHMATWAAAH |
SELEX
Jolma et al.(2013)
HOXC10_1
|
0.766
|
0.702
|
HOXC10
M03229_2.00 |
Homo sapiens |
NNTTWATKRB |
VYMATWAANN |
SELEX
Jolma et al.(2013)
HOXC10_2
|
0.766
|
0.702
|
HOXC10
M03230_2.00 |
Homo sapiens |
NWTTWAYGAB |
VTCRTWAAWN |
SELEX
Jolma et al.(2013)
HOXC10_3
|
0.766
|
0.702
|
Hoxc10
M03252_2.00 |
Mus musculus |
DTTTWAYGAY |
RTCRTWAAAH |
SELEX
Jolma et al.(2013)
Hoxc10_1
|
0.766
|
0.702
|
Hoxc10
M03253_2.00 |
Mus musculus |
DTTTWATKRY |
RYMATWAAAH |
SELEX
Jolma et al.(2013)
Hoxc10_2
|
0.766
|
0.702
|
HOXC10
M05335_2.00 |
Homo sapiens |
NDTTTATKRCN |
NGYMATAAAHN |
SELEX
Yin et al.(2017)
HOXC10_eDBD_HT-SELEX_1
|
0.766
|
0.702
|
HOXC10
M05336_2.00 |
Homo sapiens |
NRTCGTAAAHN |
NDTTTACGAYN |
SELEX
Yin et al.(2017)
HOXC10_eDBD_HT-SELEX_2
|
0.766
|
0.702
|
HOXC10
M05339_2.00 |
Homo sapiens |
NTTTTATKRCN |
NGYMATAAAAN |
SELEX
Yin et al.(2017)
HOXC10_FL_HT-SELEX_1
|
0.766
|
0.702
|
HOXC10
M05340_2.00 |
Homo sapiens |
NRTCGTAAAWN |
NWTTTACGAYN |
SELEX
Yin et al.(2017)
HOXC10_FL_HT-SELEX_2
|
0.766
|
0.702
|
HOXD10
M05112_2.00 |
Homo sapiens |
NKTTTATKRC |
GYMATAAAMN |
SELEX
Yin et al.(2017)
HOXD10_eDBD_HT-SELEX_1
|
0.766
|
0.702
|
HOXD10
M05113_2.00 |
Homo sapiens |
RTCGTAAAHN |
NDTTTACGAY |
SELEX
Yin et al.(2017)
HOXD10_eDBD_HT-SELEX_2
|
0.766
|
0.702
|
HOXD10
M05116_2.00 |
Homo sapiens |
RGTCGTAAAAH |
DTTTTACGACY |
SELEX
Yin et al.(2017)
HOXD10_FL_HT-SELEX_1
|
0.766
|
0.702
|
HOXD10
M05117_2.00 |
Homo sapiens |
RRYMATAAAAH |
DTTTTATKRYY |
SELEX
Yin et al.(2017)
HOXD10_FL_HT-SELEX_2
|
0.766
|
0.702
|
HOXD10
M10687_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$HOXD10_Q2
|
0.766
|
0.702
|
HOXD10
M10688_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$HOXD10_Q6
|
0.766
|
0.702
|
HOXC10
M05337_2.00 |
Homo sapiens |
NTTTTATKRCN |
NGYMATAAAAN |
SELEX
Yin et al.(2017)
HOXC10_eDBD_Methyl-HT-SELEX_1
|
0.766
|
0.702
|
HOXC10
M05338_2.00 |
Homo sapiens |
NRTCGTAAAHN |
NDTTTACGAYN |
SELEX
Yin et al.(2017)
HOXC10_eDBD_Methyl-HT-SELEX_2
|
0.766
|
0.702
|
HOXC10
M05341_2.00 |
Homo sapiens |
DTTTTATKRCH |
DGYMATAAAAH |
SELEX
Yin et al.(2017)
HOXC10_FL_Methyl-HT-SELEX_1
|
0.766
|
0.702
|
HOXC10
M05342_2.00 |
Homo sapiens |
VGTCGTAAAHN |
NDTTTACGACB |
SELEX
Yin et al.(2017)
HOXC10_FL_Methyl-HT-SELEX_2
|
0.766
|
0.702
|
HOXD10
M05114_2.00 |
Homo sapiens |
NTTTTATKRC |
GYMATAAAAN |
SELEX
Yin et al.(2017)
HOXD10_eDBD_Methyl-HT-SELEX_1
|
0.766
|
0.702
|
HOXD10
M05115_2.00 |
Homo sapiens |
GTCGTAAAHN |
NDTTTACGAC |
SELEX
Yin et al.(2017)
HOXD10_eDBD_Methyl-HT-SELEX_2
|
0.766
|
0.702
|
HOXD10
M05118_2.00 |
Homo sapiens |
VGTCGTAAAAH |
DTTTTACGACB |
SELEX
Yin et al.(2017)
HOXD10_FL_Methyl-HT-SELEX_1
|
0.766
|
0.702
|
HOXD10
M05119_2.00 |
Homo sapiens |
DGYAATAAAAH |
DTTTTATTRCH |
SELEX
Yin et al.(2017)
HOXD10_FL_Methyl-HT-SELEX_2
|
0.766
|
0.702
|
Hoxa10
M00382_2.00 |
Mus musculus |
NHWAYNNNN |
NNNNRTWDN |
PBM
Berger et al.(2008)
Hoxa10_2318
|
0.764
|
0.702
|
HOXA10
M05394_2.00 |
Homo sapiens |
RRTCGTAAAAH |
DTTTTACGAYY |
SELEX
Yin et al.(2017)
HOXA10_eDBD_HT-SELEX_1
|
0.764
|
0.702
|
HOXA10
M05395_2.00 |
Homo sapiens |
NTTTTATKRCY |
RGYMATAAAAN |
SELEX
Yin et al.(2017)
HOXA10_eDBD_HT-SELEX_2
|
0.764
|
0.702
|
HOXA10
M05398_2.00 |
Homo sapiens |
NRTCRTWAANN |
NNTTWAYGAYN |
SELEX
Yin et al.(2017)
HOXA10_FL_HT-SELEX_1
|
0.764
|
0.702
|
HOXA10
M05399_2.00 |
Homo sapiens |
NNTTWATKRCN |
NGYMATWAANN |
SELEX
Yin et al.(2017)
HOXA10_FL_HT-SELEX_2
|
0.764
|
0.702
|
Hoxa10
M09170_2.00 |
Mus musculus |
DCATAAAYYRBH |
DVYRRTTTATGH |
Misc
Kulakovskiy et al.(2013)
HXA10_MOUSE.H11MO.0.C
|
0.764
|
0.702
|
Hoxa10
M10763_2.00 |
Mus musculus |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$HOXA10_Q5
|
0.764
|
0.702
|
HOXA10
M05396_2.00 |
Homo sapiens |
NGTCGTAAAWN |
NWTTTACGACN |
SELEX
Yin et al.(2017)
HOXA10_eDBD_Methyl-HT-SELEX_1
|
0.764
|
0.702
|
HOXA10
M05397_2.00 |
Homo sapiens |
NTTTTATKRCB |
VGYMATAAAAN |
SELEX
Yin et al.(2017)
HOXA10_eDBD_Methyl-HT-SELEX_2
|
0.764
|
0.702
|
HOXA10
M05400_2.00 |
Homo sapiens |
NRTCGTWAANN |
NNTTWACGAYN |
SELEX
Yin et al.(2017)
HOXA10_FL_Methyl-HT-SELEX_1
|
0.764
|
0.702
|
HOXA10
M05401_2.00 |
Homo sapiens |
NNTTWATKRYN |
NRYMATWAANN |
SELEX
Yin et al.(2017)
HOXA10_FL_Methyl-HT-SELEX_2
|
0.764
|
0.702
|
Hoxd9
M03282_2.00 |
Mus musculus |
TTTWATKKB |
VMMATWAAA |
SELEX
Jolma et al.(2013)
Hoxd9_1
|
0.750
|
0.684
|
Hoxd9
M03283_2.00 |
Mus musculus |
DWTTWATKRY |
RYMATWAAWH |
SELEX
Jolma et al.(2013)
Hoxd9_2
|
0.750
|
0.684
|
Hoxd9
M03284_2.00 |
Mus musculus |
DTTWAYGRB |
VYCRTWAAH |
SELEX
Jolma et al.(2013)
Hoxd9_3
|
0.750
|
0.684
|
HOXC9
M05331_2.00 |
Homo sapiens |
GTCGTAAAAN |
NTTTTACGAC |
SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_1
|
0.750
|
0.684
|
HOXC9
M05332_2.00 |
Homo sapiens |
NTTTTATKRC |
GYMATAAAAN |
SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_2
|
0.750
|
0.684
|
HOXD9
M05104_2.00 |
Homo sapiens |
NTTTTATKRC |
GYMATAAAAN |
SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_1
|
0.750
|
0.684
|
HOXD9
M05105_2.00 |
Homo sapiens |
RTCRTAAAWN |
NWTTTAYGAY |
SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_2
|
0.750
|
0.684
|
HOXD9
M05108_2.00 |
Homo sapiens |
RTCGTAAAWN |
NWTTTACGAY |
SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_1
|
0.750
|
0.684
|
HOXD9
M05109_2.00 |
Homo sapiens |
NTTTTATKRC |
GYMATAAAAN |
SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_2
|
0.750
|
0.684
|
HOXC9
M09161_2.00 |
Homo sapiens |
HTTWATKGCH |
DGCMATWAAD |
Misc
Kulakovskiy et al.(2013)
HXC9_HUMAN.H11MO.0.C
|
0.750
|
0.684
|
HOXD9
M10686_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$HOXD9_Q2
|
0.750
|
0.684
|
HOXC9
M05333_2.00 |
Homo sapiens |
RTCGTAAAHN |
NDTTTACGAY |
SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_1
|
0.750
|
0.684
|
HOXC9
M05334_2.00 |
Homo sapiens |
NTTTWATKRC |
GYMATWAAAN |
SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_2
|
0.750
|
0.684
|
HOXD9
M05106_2.00 |
Homo sapiens |
NNTTWATKRC |
GYMATWAANN |
SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_1
|
0.750
|
0.684
|
HOXD9
M05107_2.00 |
Homo sapiens |
RTCGTAAANN |
NNTTTACGAY |
SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_2
|
0.750
|
0.684
|
HOXD9
M05110_2.00 |
Homo sapiens |
RTCGTAAANN |
NNTTTACGAY |
SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_1
|
0.750
|
0.684
|
HOXD9
M05111_2.00 |
Homo sapiens |
NDTTWATKRC |
GYMATWAAHN |
SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_2
|
0.750
|
0.684
|
Hoxb9
M00410_2.00 |
Mus musculus |
NTTWAYDDNN |
NNHHRTWAAN |
PBM
Berger et al.(2008)
Hoxb9_3413
|
0.750
|
0.667
|
Hoxa9
M00475_2.00 |
Mus musculus |
NNDDBNNN |
NNNVHHNN |
PBM
Berger et al.(2008)
Hoxa9_2622
|
0.750
|
0.667
|
HOXA9
M03085_2.00 |
Homo sapiens |
NNDTTWAYGAYN |
NRTCRTWAAHNN |
SELEX
Jolma et al.(2013)
HOXA10_1
|
0.750
|
0.667
|
HOXA9
M03086_2.00 |
Homo sapiens |
NDTTWATKRYN |
NRYMATWAAHN |
SELEX
Jolma et al.(2013)
HOXA10_2
|
0.750
|
0.667
|
HOXA9
M04932_2.00 |
Homo sapiens |
NNDWWABKRC |
GYMVTWWHNN |
SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_1
|
0.750
|
0.667
|
HOXA9
M04933_2.00 |
Homo sapiens |
NNDTWAYGRB |
VYCRTWAHNN |
SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_2
|
0.750
|
0.667
|
HOXB9
M05289_2.00 |
Homo sapiens |
RTCRTAAAWN |
NWTTTAYGAY |
SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_1
|
0.750
|
0.667
|
HOXB9
M05290_2.00 |
Homo sapiens |
NTTTWATKRC |
GYMATWAAAN |
SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_2
|
0.750
|
0.667
|
Hoxa9
M08138_2.00 |
Mus musculus |
TGATTKATKRB |
VYMATMAATCA |
ChIP-seq
Mathelier et al.(2014)
MA0594.1
|
0.750
|
0.667
|
HOXA9
M09130_2.00 |
Homo sapiens |
DCATAAAYYRBH |
DVYRRTTTATGH |
Misc
Kulakovskiy et al.(2013)
HXA10_HUMAN.H11MO.0.C
|
0.750
|
0.667
|
HOXA9
M09131_2.00 |
Homo sapiens |
HHATAAATCAH |
DTGATTTATDD |
Misc
Kulakovskiy et al.(2013)
HXA9_HUMAN.H11MO.0.B
|
0.750
|
0.667
|
Hoxa9
M09203_2.00 |
Mus musculus |
HHATAAATCAH |
DTGATTTATDD |
Misc
Kulakovskiy et al.(2013)
HXA9_MOUSE.H11MO.0.B
|
0.750
|
0.667
|
Hoxa9
M09575_2.00 |
Mus musculus |
WGATTKATDRBY |
RVYHATMAATCW |
Misc
Heinz et al.(2010)
HSC-Hoxa9_GSE33509
|
0.750
|
0.667
|
HOXA9
M10642_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$HOXA10_Q6
|
0.750
|
0.667
|
HOXA9
M10643_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$HOXA9_04
|
0.750
|
0.667
|
HOXA9
M10644_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$HOXA9_Q5_01
|
0.750
|
0.667
|
HOXA9
M10645_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$HOXA9_Q5
|
0.750
|
0.667
|
HOXB9
M05291_2.00 |
Homo sapiens |
GTCGTAAAHB |
VDTTTACGAC |
SELEX
Yin et al.(2017)
HOXB9_eDBD_Methyl-HT-SELEX
|
0.750
|
0.667
|
HOXA9
M04934_2.00 |
Homo sapiens |
NNDTWAYKRC |
GYMRTWAHNN |
SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_1
|
0.750
|
0.667
|
HOXA9
M04935_2.00 |
Homo sapiens |
NNDTWACGAY |
RTCGTWAHNN |
SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_2
|
0.750
|
0.667
|
Hoxc9
M00470_2.00 |
Mus musculus |
NGTAATWAAN |
NTTWATTACN |
PBM
Berger et al.(2008)
Hoxc9_2367
|
0.742
|
0.667
|
Hoxc9
M08137_2.00 |
Mus musculus |
NWGATTTATDGSH |
DSCHATAAATCWN |
ChIP-seq
Mathelier et al.(2014)
MA0485.1
|
0.742
|
0.667
|
Hoxc9
M09574_2.00 |
Mus musculus |
TGATTTATDGCH |
DGCHATAAATCA |
Misc
Heinz et al.(2010)
Ainv15-Hoxc9_GSE21812
|
0.742
|
0.667
|
Hoxd12_CONSTRUCT
M00538_2.00 |
PBM CONSTRUCTS |
NWTWAYNDBN |
NVHNRTWAWN |
PBM
Berger et al.(2008)
Hoxd12_3481
|
0.651
|
0.667
|
HOXD12
M03206_2.00 |
Homo sapiens |
SYAATAAAA |
TTTTATTRS |
SELEX
Jolma et al.(2013)
HOXD12_1
|
0.651
|
0.667
|
HOXD12
M03207_2.00 |
Homo sapiens |
RVTCGTAAAAH |
DTTTTACGABY |
SELEX
Jolma et al.(2013)
HOXD12_2
|
0.651
|
0.667
|
HOXD12
M03208_2.00 |
Homo sapiens |
NRTCGTAAAHN |
NDTTTACGAYN |
SELEX
Jolma et al.(2013)
HOXD12_3
|
0.651
|
0.667
|
HOXD12
M03209_2.00 |
Homo sapiens |
DTTWATYRC |
GYRATWAAH |
SELEX
Jolma et al.(2013)
HOXD12_4
|
0.651
|
0.667
|
HOXD12
M05279_2.00 |
Homo sapiens |
NKTWACGAYN |
NRTCGTWAMN |
SELEX
Yin et al.(2017)
HOXD12_eDBD_HT-SELEX
|
0.651
|
0.667
|
HOXD12
M05280_2.00 |
Homo sapiens |
NRTCGTAAAH |
DTTTACGAYN |
SELEX
Yin et al.(2017)
HOXD12_eDBD_Methyl-HT-SELEX
|
0.651
|
0.667
|
Abd-B
M00554_2.00 |
Drosophila melanogaster |
NWTWAYDDNN |
NNHHRTWAWN |
PBM
Busser et al.(2012a)
Abd-B
|
0.624
|
0.667
|
Abd-B
M03772_2.00 |
Drosophila melanogaster |
DRTCRTAAAWH |
DWTTTAYGAYH |
SELEX
Nitta et al.(2015)
Abd-B_1
|
0.624
|
0.667
|
Abd-B
M03773_2.00 |
Drosophila melanogaster |
DTTTTATKRCY |
RGYMATAAAAH |
SELEX
Nitta et al.(2015)
Abd-B_2
|
0.624
|
0.667
|
Abd-B
M03774_2.00 |
Drosophila melanogaster |
NKCARYAACGACYW |
WRGTCGTTRYTGMN |
SELEX
Nitta et al.(2015)
Abd-B_3
|
0.624
|
0.667
|
Abd-B
M03775_2.00 |
Drosophila melanogaster |
DTTTWATGKSTTTY |
RAAASMCATWAAAH |
SELEX
Nitta et al.(2015)
Abd-B_4
|
0.624
|
0.667
|
Abd-B
M06476_2.00 |
Drosophila melanogaster |
TTTATKR |
YMATAAA |
B1H
Mathelier et al.(2014)
MA0165.1
|
0.624
|
0.667
|
Abd-B
M06211_2.00 |
Drosophila melanogaster |
YCATAAAA |
TTTTATGR |
B1H
Zhu et al.(2011)
Abd-B_FlyReg_FBgn0000015
|
0.624
|
0.667
|
Abd-B
M09672_2.00 |
Drosophila melanogaster |
YMATAAAAHH |
DDTTTTATKR |
Misc
Kulakovskiy et al.(2009)
Abd-B
|
0.624
|
0.667
|
Abd-B
M10779_2.00 |
Drosophila melanogaster |
VSNTTDATKRCNNN |
NNNGYMATHAANSB |
Transfac
Matys et al.(2006)
I$ABDB_01
|
0.624
|
0.667
|
Abd-B
M10780_2.00 |
Drosophila melanogaster |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
I$ABDB_Q6
|
0.624
|
0.667
|
HXD12_HETFR
M02196_2.00 |
Heterodontus francisci |
TTWATKRC |
GYMATWAA |
PBM
Weirauch et al.(2014)
pTH6533
|
0.618
|
0.649
|
Hoxc12
M00508_2.00 |
Mus musculus |
NDTWAYNDBN |
NVHNRTWAHN |
PBM
Berger et al.(2008)
Hoxc12_3480
|
0.606
|
0.596
|
HOXC12
M03135_2.00 |
Homo sapiens |
TTTTATTRY |
RYAATAAAA |
SELEX
Jolma et al.(2013)
HOXC12_1
|
0.606
|
0.596
|
HOXC12
M03136_2.00 |
Homo sapiens |
RRTCGTAAAAH |
DTTTTACGAYY |
SELEX
Jolma et al.(2013)
HOXC12_2
|
0.606
|
0.596
|
HOXC12
M05083_2.00 |
Homo sapiens |
NGYAATAAAAN |
NTTTTATTRCN |
SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_1
|
0.606
|
0.596
|
HOXC12
M05084_2.00 |
Homo sapiens |
VRTCGTAAAHN |
NDTTTACGAYB |
SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_2
|
0.606
|
0.596
|
HOXC12
M05085_2.00 |
Homo sapiens |
NGYAATAAAAH |
DTTTTATTRCN |
SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_1
|
0.606
|
0.596
|
HOXC12
M05086_2.00 |
Homo sapiens |
NRTCGTAAAHH |
DDTTTACGAYN |
SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_2
|
0.606
|
0.596
|
CBG23031
M01245_2.00 |
Caenorhabditis briggsae |
NTTWATKRNN |
NNYMATWAAN |
PBM
Lambert et al.(2019)
pTH11458
|
0.599
|
0.526
|
For this family, TFs with SR scores > 0.599 will likely have a similar motif |