|
ENSP00000222753-D1
(Bos grunniens)
Homeodomain
|
TF Information |
Pfam ID |
Interpro ID |
Gene ID |
CIS-BP ID |
Sequence source |
PF00046 (Homeobox) |
IPR001356 |
ENSP00000222753-D1 |
T225960_2.00 |
GigaDB (2015-Oct-22) |
NCBI Gene Info:This gene encodes a tumor suppressor protein containing transcriptional activation, DNA binding, and oligomerization domains. The encoded protein responds to diverse cellular stresses to regulate expression of target genes, thereby inducing cell cycle arrest, apoptosis, senescence, DNA repair, or changes in metabolism. Mutations in this gene are associated with a variety of human cancers, including hereditary cancers such as Li-Fraumeni syndrome. Alternative splicing of this gene and the use of alternate promoters result in multiple transcript variants and isoforms. Additional isoforms have also been shown to result from the use of alternate translation initiation codons from identical transcript variants (PMIDs: 12032546, 20937277). [provided by RefSeq, Dec 2016] |
Directly determined binding motifs |
Name/Motif ID |
Species |
Forward |
Reverse |
Type/Study/Study ID |
SR Score |
DBD Identity |
No direct experiments |
|
|
|
|
|
Motifs from related TFs |
Name/Motif ID |
Species |
Forward |
Reverse |
Type/Study/Study ID |
SR Score |
DBD Identity |
Hoxa13
M00473_2.00 |
Mus musculus |
NTTWAYDRN |
NYHRTWAAN |
PBM
Berger et al.(2008)
Hoxa13_3126
|
0.867
|
1.000
|
HOXA13
M03098_2.00 |
Homo sapiens |
DKTTTATKRS |
SYMATAAAMH |
SELEX
Jolma et al.(2013)
HOXA13_1
|
0.867
|
1.000
|
HOXA13
M03099_2.00 |
Homo sapiens |
NCTCGTAAAHN |
NDTTTACGAGN |
SELEX
Jolma et al.(2013)
HOXA13_2
|
0.867
|
1.000
|
HOXA13
M03100_2.00 |
Homo sapiens |
DKTTTATKRS |
SYMATAAAMH |
SELEX
Jolma et al.(2013)
HOXA13_3
|
0.867
|
1.000
|
HOXA13
M03101_2.00 |
Homo sapiens |
NCTCGTAAAAH |
DTTTTACGAGN |
SELEX
Jolma et al.(2013)
HOXA13_4
|
0.867
|
1.000
|
HOXA13
M04977_2.00 |
Homo sapiens |
DTTTTATKGGB |
VCCMATAAAAH |
SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_1
|
0.867
|
1.000
|
HOXA13
M04978_2.00 |
Homo sapiens |
NCTCGTAAAHN |
NDTTTACGAGN |
SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_2
|
0.867
|
1.000
|
HOXA13
M04981_2.00 |
Homo sapiens |
DTTTTATKRSN |
NSYMATAAAAH |
SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_1
|
0.867
|
1.000
|
HOXA13
M04982_2.00 |
Homo sapiens |
NCTCGTAAAWH |
DWTTTACGAGN |
SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_2
|
0.867
|
1.000
|
HOXA13
M09134_2.00 |
Homo sapiens |
VDTWTWATKGS |
SCMATWAWAHB |
Misc
Kulakovskiy et al.(2013)
HXA13_HUMAN.H11MO.0.C
|
0.867
|
1.000
|
Hoxa13
M09202_2.00 |
Mus musculus |
VDTWTWATKGS |
SCMATWAWAHB |
Misc
Kulakovskiy et al.(2013)
HXA13_MOUSE.H11MO.0.C
|
0.867
|
1.000
|
HOXA13
M10653_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$HOXA13_01
|
0.867
|
1.000
|
HOXA13
M10654_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$HOXA13_02
|
0.867
|
1.000
|
HOXA13
M04979_2.00 |
Homo sapiens |
DTTTTATTRSN |
NSYAATAAAAH |
SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_1
|
0.867
|
1.000
|
HOXA13
M04980_2.00 |
Homo sapiens |
NCTCGTAAAHN |
NDTTTACGAGN |
SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_2
|
0.867
|
1.000
|
HOXA13
M04983_2.00 |
Homo sapiens |
DKTTTATTGBN |
NVCAATAAAMH |
SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_1
|
0.867
|
1.000
|
HOXA13
M04984_2.00 |
Homo sapiens |
NCTCGTAAAWH |
DWTTTACGAGN |
SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_2
|
0.867
|
1.000
|
Hoxc13
M00389_2.00 |
Mus musculus |
NTTWAYDRNN |
NNYHRTWAAN |
PBM
Berger et al.(2008)
Hoxc13_3127
|
0.862
|
0.930
|
HOXC13
M03129_2.00 |
Homo sapiens |
NTTTTATTRS |
SYAATAAAAN |
SELEX
Jolma et al.(2013)
HOXC13_1
|
0.862
|
0.930
|
HOXC13
M03130_2.00 |
Homo sapiens |
NCTCGTAAAAH |
DTTTTACGAGN |
SELEX
Jolma et al.(2013)
HOXC13_2
|
0.862
|
0.930
|
HOXC13
M05072_2.00 |
Homo sapiens |
RKTTTATKGSN |
NSCMATAAAMY |
SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_1
|
0.862
|
0.930
|
HOXC13
M05073_2.00 |
Homo sapiens |
BCTCGTAAAMH |
DKTTTACGAGV |
SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_2
|
0.862
|
0.930
|
HOXC13
M10680_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$HOXC13_Q2
|
0.862
|
0.930
|
HOXC13
M05074_2.00 |
Homo sapiens |
BCTCGTAAAAH |
DTTTTACGAGV |
SELEX
Yin et al.(2017)
HOXC13_eDBD_Methyl-HT-SELEX
|
0.862
|
0.930
|
hoxd13a
M02081_2.00 |
Danio rerio |
WTTTATDR |
YHATAAAW |
PBM
Weirauch et al.(2014)
pTH6143
|
0.836
|
0.842
|
HOXD13
M00299_2.00 |
Homo sapiens |
NTTWAYDDN |
NHHRTWAAN |
PBM
Barrera et al.(2016)
HOXD13_REF
|
0.834
|
0.895
|
Hoxd13
M00394_2.00 |
Mus musculus |
NWTHRYDDN |
NHHRYDAWN |
PBM
Berger et al.(2008)
Hoxd13_2356
|
0.834
|
0.895
|
HOXD13
M03141_2.00 |
Homo sapiens |
DTTTTATKRS |
SYMATAAAAH |
SELEX
Jolma et al.(2013)
HOXD13_1
|
0.834
|
0.895
|
HOXD13
M03142_2.00 |
Homo sapiens |
BCTCGTAAAAH |
DTTTTACGAGV |
SELEX
Jolma et al.(2013)
HOXD13_2
|
0.834
|
0.895
|
Hoxd13
M03247_2.00 |
Mus musculus |
DKTTTATTRS |
SYAATAAAMH |
SELEX
Jolma et al.(2013)
Hoxd13_1
|
0.834
|
0.895
|
Hoxd13
M03248_2.00 |
Mus musculus |
DDTTTAYKAGN |
NCTMRTAAAHH |
SELEX
Jolma et al.(2013)
Hoxd13_2
|
0.834
|
0.895
|
HOXD13
M05122_2.00 |
Homo sapiens |
GKTTTATKGSS |
SSCMATAAAMC |
SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_1
|
0.834
|
0.895
|
HOXD13
M05123_2.00 |
Homo sapiens |
BCTCGTAAAMH |
DKTTTACGAGV |
SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_2
|
0.834
|
0.895
|
HOXD13
M10689_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$HOXD13_Q6
|
0.834
|
0.895
|
HOXD13
M00295_2.00 |
Homo sapiens |
NTTWAYDDN |
NHHRTWAAN |
PBM
Barrera et al.(2016)
HOXD13_N298S
|
0.834
|
0.895
|
HOXD13
M05124_2.00 |
Homo sapiens |
DDTTTATTRBB |
VVYAATAAAHH |
SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_1
|
0.834
|
0.895
|
HOXD13
M05125_2.00 |
Homo sapiens |
VCTCGTAAAAH |
DTTTTACGAGB |
SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_2
|
0.834
|
0.895
|
HOXD13
M00300_2.00 |
Homo sapiens |
WTTTATDR |
YHATAAAW |
PBM
Barrera et al.(2016)
HOXD13_S316C
|
0.834
|
0.877
|
HOXD13
M00293_2.00 |
Homo sapiens |
NTTWAYDDNN |
NNHHRTWAAN |
PBM
Barrera et al.(2016)
HOXD13_I297V
|
0.834
|
0.877
|
HOXD13
M00298_2.00 |
Homo sapiens |
NTTWAYDDN |
NHHRTWAAN |
PBM
Barrera et al.(2016)
HOXD13_R306W
|
0.826
|
0.877
|
HOXD13
M00294_2.00 |
Homo sapiens |
THGTWAAW |
WTTWACDA |
PBM
Barrera et al.(2016)
HOXD13_I322L
|
0.816
|
0.877
|
HOXB13
M02092_2.00 |
Homo sapiens |
NTTWAYDDNN |
NNHHRTWAAN |
PBM
Weirauch et al.(2014)
pTH5808
|
0.709
|
0.842
|
Hoxb13
M00505_2.00 |
Mus musculus |
NTTWAYDDNN |
NNHHRTWAAN |
PBM
Berger et al.(2008)
Hoxb13_3479
|
0.709
|
0.842
|
HOXB13
M03175_2.00 |
Homo sapiens |
DTTTTATKGG |
CCMATAAAAH |
SELEX
Jolma et al.(2013)
HOXB13_1
|
0.709
|
0.842
|
HOXB13
M03176_2.00 |
Homo sapiens |
BCTCGTAAAAH |
DTTTTACGAGV |
SELEX
Jolma et al.(2013)
HOXB13_2
|
0.709
|
0.842
|
HOXB13
M05201_2.00 |
Homo sapiens |
DTTTTATKGGN |
NCCMATAAAAH |
SELEX
Yin et al.(2017)
HOXB13_eDBD_HT-SELEX_1
|
0.709
|
0.842
|
HOXB13
M05202_2.00 |
Homo sapiens |
NCTCGTAAAHH |
DDTTTACGAGN |
SELEX
Yin et al.(2017)
HOXB13_eDBD_HT-SELEX_2
|
0.709
|
0.842
|
HOXB13
M09149_2.00 |
Homo sapiens |
TTTTATDRSN |
NSYHATAAAA |
Misc
Kulakovskiy et al.(2013)
HXB13_HUMAN.H11MO.0.A
|
0.709
|
0.842
|
HOXB13
M05203_2.00 |
Homo sapiens |
NCTCGTAAAAH |
DTTTTACGAGN |
SELEX
Yin et al.(2017)
HOXB13_eDBD_Methyl-HT-SELEX
|
0.709
|
0.842
|
cad
M03780_2.00 |
Drosophila melanogaster |
NKTTTATKRCHB |
VDGYMATAAAMN |
SELEX
Nitta et al.(2015)
cad_1
|
0.611
|
0.544
|
cad
M03781_2.00 |
Drosophila melanogaster |
NDTTTATKRCHN |
NDGYMATAAAHN |
SELEX
Nitta et al.(2015)
cad_2
|
0.611
|
0.544
|
cad
M03782_2.00 |
Drosophila melanogaster |
NDTTTATKRCNB |
VNGYMATAAAHN |
SELEX
Nitta et al.(2015)
cad_3
|
0.611
|
0.544
|
cad
M03783_2.00 |
Drosophila melanogaster |
NNTTTAYGRYNN |
NNRYCRTAAANN |
SELEX
Nitta et al.(2015)
cad_4
|
0.611
|
0.544
|
cad
M06223_2.00 |
Drosophila melanogaster |
HTTWATTR |
YAATWAAD |
B1H
Zhu et al.(2011)
Cad_Cell_FBgn0000251
|
0.611
|
0.544
|
cad
M06224_2.00 |
Drosophila melanogaster |
RBYVDAAMV |
BKTTHBRVY |
B1H
Zhu et al.(2011)
cad_FlyReg_FBgn0000251
|
0.611
|
0.544
|
cad
M06225_2.00 |
Drosophila melanogaster |
NTTWATKR |
YMATWAAN |
B1H
Zhu et al.(2011)
Cad_SOLEXA_FBgn0000251
|
0.611
|
0.544
|
cad
M08420_2.00 |
Drosophila melanogaster |
DTTTTATKRYY |
RRYMATAAAAH |
ChIP-chip
Mathelier et al.(2014)
MA0216.2
|
0.611
|
0.544
|
cad
M09580_2.00 |
Drosophila melanogaster |
DTTTAYGRYN |
NRYCRTAAAH |
Misc
Heinz et al.(2010)
Drosophila-Embryos_modEncode
|
0.611
|
0.544
|
cad
M09674_2.00 |
Drosophila melanogaster |
HTTTATKRBY |
RVYMATAAAD |
Misc
Kulakovskiy et al.(2009)
cad
|
0.611
|
0.544
|
cad
M10783_2.00 |
Drosophila melanogaster |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
I$CAD_Q6
|
0.611
|
0.544
|
HOXD13
M00296_2.00 |
Homo sapiens |
GKATAAAH |
DTTTATMC |
PBM
Barrera et al.(2016)
HOXD13_Q325K
|
0.601
|
0.877
|
HOXD13
M00297_2.00 |
Homo sapiens |
NWTWRKNNNN |
NNNNMYWAWN |
PBM
Barrera et al.(2016)
HOXD13_Q325R
|
0.601
|
0.877
|
For this family, TFs with SR scores > 0.599 will likely have a similar motif |