ENSP00000282549-D3 (Bos grunniens)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 ENSP00000282549-D3 T226005_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CRX
M00271_2.00
Homo sapiens
NHDAKNN

NNMTHDN
PBM
Barrera et al.(2016)
CRX_R41Q
0.632 0.768
Otx1
M00396_2.00
Mus musculus
NTAAKCYN

NRGMTTAN
PBM
Berger et al.(2008)
Otx1_2325
0.615 0.839
Otx2
M00418_2.00
Mus musculus
NTAAKMBN

NVKMTTAN
PBM
Berger et al.(2008)
Otx2_3441
0.615 0.839
OTX1
M03116_2.00
Homo sapiens
NNTAAKCGGATTANN

NNTAATCCGMTTANN
SELEX
Jolma et al.(2013)
OTX1_1
0.615 0.839
OTX1
M03117_2.00
Homo sapiens
NTAATCSB

VSGATTAN
SELEX
Jolma et al.(2013)
OTX1_2
0.615 0.839
OTX2
M03197_2.00
Homo sapiens
NHTAAKCGGATTANN

NNTAATCCGMTTADN
SELEX
Jolma et al.(2013)
OTX2_1
0.615 0.839
OTX2
M03198_2.00
Homo sapiens
HTAATCCB

VGGATTAD
SELEX
Jolma et al.(2013)
OTX2_2
0.615 0.839
Otx1
M03249_2.00
Mus musculus
NNTAAKCGGATTANN

NNTAATCCGMTTANN
SELEX
Jolma et al.(2013)
Otx1_1
0.615 0.839
Otx1
M03250_2.00
Mus musculus
NTAATCCN

NGGATTAN
SELEX
Jolma et al.(2013)
Otx1_2
0.615 0.839
OTX1
M05022_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
OTX1_eDBD_HT-SELEX
0.615 0.839
OTX1
M05024_2.00
Homo sapiens
NTAATCCNNN

NNNGGATTAN
SELEX
Yin et al.(2017)
OTX1_FL_HT-SELEX
0.615 0.839
OTX2
M05251_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
OTX2_FL_HT-SELEX
0.615 0.839
OTX2
M09153_2.00
Homo sapiens
BYTAATCCYYN

NRRGGATTARV
Misc
Kulakovskiy et al.(2013)
OTX2_HUMAN.H11MO.0.A
0.615 0.839
Otx2
M09183_2.00
Mus musculus
HTAATCCYNYNN

NNRNRGGATTAD
Misc
Kulakovskiy et al.(2013)
OTX2_MOUSE.H11MO.0.A
0.615 0.839
Otx2
M09569_2.00
Mus musculus
NHTAATCCHB

VDGGATTADN
Misc
Heinz et al.(2010)
EpiLC-Otx2_GSE56098
0.615 0.839
OTX1
M10673_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OTX1_Q5
0.615 0.839
OTX2
M10727_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OTX2_Q3_01
0.615 0.839
OTX2
M10728_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OTX2_Q3
0.615 0.839
OTX1
M05023_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
OTX1_eDBD_Methyl-HT-SELEX
0.615 0.839
OTX1
M05025_2.00
Homo sapiens
HTAATCCNHN

NDNGGATTAD
SELEX
Yin et al.(2017)
OTX1_FL_Methyl-HT-SELEX
0.615 0.839
OTX2
M05252_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
OTX2_FL_Methyl-HT-SELEX
0.615 0.839
oc
M03808_2.00
Drosophila melanogaster
HTAATCCB

VGGATTAD
SELEX
Nitta et al.(2015)
oc_1
0.614 0.821
oc
M06502_2.00
Drosophila melanogaster
TAATCC

GGATTA
B1H
Mathelier et al.(2014)
MA0234.1
0.614 0.821
oc
M06282_2.00
Drosophila melanogaster
WTAATCC

GGATTAW
B1H
Zhu et al.(2011)
Oc_Cell_FBgn0004102
0.614 0.821
oc
M06283_2.00
Drosophila melanogaster
NTAATCCB

VGGATTAN
B1H
Zhu et al.(2011)
Oc_SOLEXA_FBgn0004102
0.614 0.821
oc
M09681_2.00
Drosophila melanogaster
HTAATCCN

NGGATTAD
Misc
Kulakovskiy et al.(2009)
oc
0.614 0.821
CRX
M00275_2.00
Homo sapiens
NMTAATCCSN

NSGGATTAKN
PBM
Barrera et al.(2016)
CRX_V66I
0.609 0.768
CRX
M00274_2.00
Homo sapiens
NMTAATCCSN

NSGGATTAKN
PBM
Barrera et al.(2016)
CRX_REF
0.599 0.750
Crx
M00489_2.00
Mus musculus
NWAAKMBN

NVKMTTWN
PBM
Berger et al.(2008)
Crx_3485
0.599 0.750
CRX
M04949_2.00
Homo sapiens
NTAATCCN

NGGATTAN
SELEX
Yin et al.(2017)
CRX_FL_HT-SELEX
0.599 0.750
Crx
M08139_2.00
Mus musculus
YTAATCCYCYY

RRGRGGATTAR
ChIP-seq
Mathelier et al.(2014)
MA0467.1
0.599 0.750
CRX
M09132_2.00
Homo sapiens
BYTAATCCBHYYN

NRRDVGGATTARV
Misc
Kulakovskiy et al.(2013)
CRX_HUMAN.H11MO.0.B
0.599 0.750
Crx
M09208_2.00
Mus musculus
BYTAATCCBHYYN

NRRDVGGATTARV
Misc
Kulakovskiy et al.(2013)
CRX_MOUSE.H11MO.0.A
0.599 0.750
Crx
M09577_2.00
Mus musculus
NYTAATCC

GGATTARN
Misc
Heinz et al.(2010)
Retina-Crx_GSE20012
0.599 0.750
CRX
M10647_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CRX_Q4_01
0.599 0.750
CRX
M10648_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CRX_Q4_02
0.599 0.750
CRX
M00272_2.00
Homo sapiens
NNHNATNN

NNATNDNN
PBM
Barrera et al.(2016)
CRX_R41W
0.599 0.750
CRX
M00273_2.00
Homo sapiens
NNYTAATCCVN

NBGGATTARNN
PBM
Barrera et al.(2016)
CRX_R90W
0.599 0.750
CRX
M04950_2.00
Homo sapiens
HTAATCCN

NGGATTAD
SELEX
Yin et al.(2017)
CRX_FL_Methyl-HT-SELEX
0.599 0.750
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000282549-D3 Homeodomain 39 94

Links

Other Homeodomain family TFs
Other Bos grunniens TFs

Invalid Input OrderBy

242 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action