CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSP00000282549-D3
(
Bos grunniens
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
ENSP00000282549-D3
T226005_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CRX
M00271_2.00
Homo sapiens
NHDAKNN
NNMTHDN
PBM
Barrera et al.(2016)
CRX_R41Q
0.632
0.768
Otx1
M00396_2.00
Mus musculus
NTAAKCYN
NRGMTTAN
PBM
Berger et al.(2008)
Otx1_2325
0.615
0.839
Otx2
M00418_2.00
Mus musculus
NTAAKMBN
NVKMTTAN
PBM
Berger et al.(2008)
Otx2_3441
0.615
0.839
OTX1
M03116_2.00
Homo sapiens
NNTAAKCGGATTANN
NNTAATCCGMTTANN
SELEX
Jolma et al.(2013)
OTX1_1
0.615
0.839
OTX1
M03117_2.00
Homo sapiens
NTAATCSB
VSGATTAN
SELEX
Jolma et al.(2013)
OTX1_2
0.615
0.839
OTX2
M03197_2.00
Homo sapiens
NHTAAKCGGATTANN
NNTAATCCGMTTADN
SELEX
Jolma et al.(2013)
OTX2_1
0.615
0.839
OTX2
M03198_2.00
Homo sapiens
HTAATCCB
VGGATTAD
SELEX
Jolma et al.(2013)
OTX2_2
0.615
0.839
Otx1
M03249_2.00
Mus musculus
NNTAAKCGGATTANN
NNTAATCCGMTTANN
SELEX
Jolma et al.(2013)
Otx1_1
0.615
0.839
Otx1
M03250_2.00
Mus musculus
NTAATCCN
NGGATTAN
SELEX
Jolma et al.(2013)
Otx1_2
0.615
0.839
OTX1
M05022_2.00
Homo sapiens
NTAATCCN
NGGATTAN
SELEX
Yin et al.(2017)
OTX1_eDBD_HT-SELEX
0.615
0.839
OTX1
M05024_2.00
Homo sapiens
NTAATCCNNN
NNNGGATTAN
SELEX
Yin et al.(2017)
OTX1_FL_HT-SELEX
0.615
0.839
OTX2
M05251_2.00
Homo sapiens
NTAATCCN
NGGATTAN
SELEX
Yin et al.(2017)
OTX2_FL_HT-SELEX
0.615
0.839
OTX2
M09153_2.00
Homo sapiens
BYTAATCCYYN
NRRGGATTARV
Misc
Kulakovskiy et al.(2013)
OTX2_HUMAN.H11MO.0.A
0.615
0.839
Otx2
M09183_2.00
Mus musculus
HTAATCCYNYNN
NNRNRGGATTAD
Misc
Kulakovskiy et al.(2013)
OTX2_MOUSE.H11MO.0.A
0.615
0.839
Otx2
M09569_2.00
Mus musculus
NHTAATCCHB
VDGGATTADN
Misc
Heinz et al.(2010)
EpiLC-Otx2_GSE56098
0.615
0.839
OTX1
M10673_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OTX1_Q5
0.615
0.839
OTX2
M10727_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OTX2_Q3_01
0.615
0.839
OTX2
M10728_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OTX2_Q3
0.615
0.839
OTX1
M05023_2.00
Homo sapiens
NTAATCCN
NGGATTAN
SELEX
Yin et al.(2017)
OTX1_eDBD_Methyl-HT-SELEX
0.615
0.839
OTX1
M05025_2.00
Homo sapiens
HTAATCCNHN
NDNGGATTAD
SELEX
Yin et al.(2017)
OTX1_FL_Methyl-HT-SELEX
0.615
0.839
OTX2
M05252_2.00
Homo sapiens
NTAATCCN
NGGATTAN
SELEX
Yin et al.(2017)
OTX2_FL_Methyl-HT-SELEX
0.615
0.839
oc
M03808_2.00
Drosophila melanogaster
HTAATCCB
VGGATTAD
SELEX
Nitta et al.(2015)
oc_1
0.614
0.821
oc
M06502_2.00
Drosophila melanogaster
TAATCC
GGATTA
B1H
Mathelier et al.(2014)
MA0234.1
0.614
0.821
oc
M06282_2.00
Drosophila melanogaster
WTAATCC
GGATTAW
B1H
Zhu et al.(2011)
Oc_Cell_FBgn0004102
0.614
0.821
oc
M06283_2.00
Drosophila melanogaster
NTAATCCB
VGGATTAN
B1H
Zhu et al.(2011)
Oc_SOLEXA_FBgn0004102
0.614
0.821
oc
M09681_2.00
Drosophila melanogaster
HTAATCCN
NGGATTAD
Misc
Kulakovskiy et al.(2009)
oc
0.614
0.821
CRX
M00275_2.00
Homo sapiens
NMTAATCCSN
NSGGATTAKN
PBM
Barrera et al.(2016)
CRX_V66I
0.609
0.768
CRX
M00274_2.00
Homo sapiens
NMTAATCCSN
NSGGATTAKN
PBM
Barrera et al.(2016)
CRX_REF
0.599
0.750
Crx
M00489_2.00
Mus musculus
NWAAKMBN
NVKMTTWN
PBM
Berger et al.(2008)
Crx_3485
0.599
0.750
CRX
M04949_2.00
Homo sapiens
NTAATCCN
NGGATTAN
SELEX
Yin et al.(2017)
CRX_FL_HT-SELEX
0.599
0.750
Crx
M08139_2.00
Mus musculus
YTAATCCYCYY
RRGRGGATTAR
ChIP-seq
Mathelier et al.(2014)
MA0467.1
0.599
0.750
CRX
M09132_2.00
Homo sapiens
BYTAATCCBHYYN
NRRDVGGATTARV
Misc
Kulakovskiy et al.(2013)
CRX_HUMAN.H11MO.0.B
0.599
0.750
Crx
M09208_2.00
Mus musculus
BYTAATCCBHYYN
NRRDVGGATTARV
Misc
Kulakovskiy et al.(2013)
CRX_MOUSE.H11MO.0.A
0.599
0.750
Crx
M09577_2.00
Mus musculus
NYTAATCC
GGATTARN
Misc
Heinz et al.(2010)
Retina-Crx_GSE20012
0.599
0.750
CRX
M10647_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CRX_Q4_01
0.599
0.750
CRX
M10648_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CRX_Q4_02
0.599
0.750
CRX
M00272_2.00
Homo sapiens
NNHNATNN
NNATNDNN
PBM
Barrera et al.(2016)
CRX_R41W
0.599
0.750
CRX
M00273_2.00
Homo sapiens
NNYTAATCCVN
NBGGATTARNN
PBM
Barrera et al.(2016)
CRX_R90W
0.599
0.750
CRX
M04950_2.00
Homo sapiens
HTAATCCN
NGGATTAD
SELEX
Yin et al.(2017)
CRX_FL_Methyl-HT-SELEX
0.599
0.750
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000282549-D3
Homeodomain
39
94
QERMMFTRVQLDVLEALFAKTRYPHIFTWEEVALKINLPESRVQAWFKNQRAKCRQ
Links
Other
Homeodomain
family TFs
Other
Bos grunniens
TFs
242 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy