CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gfo_R008628
(
Geospiza fortis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Gfo_R008628
T226203_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NKX6-2
M05184_2.00
Homo sapiens
DTAATTRN
NYAATTAH
SELEX
Yin et al.(2017)
NKX6-2_eDBD_HT-SELEX
0.377
1.000
NKX6-2
M05186_2.00
Homo sapiens
WTAATKAB
VTMATTAW
SELEX
Yin et al.(2017)
NKX6-2_FL_HT-SELEX
0.377
1.000
NKX6-2
M10711_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX62_Q2
0.377
1.000
NKX6-2
M05185_2.00
Homo sapiens
NTMATKRN
NYMATKAN
SELEX
Yin et al.(2017)
NKX6-2_eDBD_Methyl-HT-SELEX
0.377
1.000
NKX6-2
M05187_2.00
Homo sapiens
WTAATKAB
VTMATTAW
SELEX
Yin et al.(2017)
NKX6-2_FL_Methyl-HT-SELEX
0.377
1.000
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gfo_R008628
Homeodomain
62
107
KHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKV
Links
Other
Homeodomain
family TFs
Other
Geospiza fortis
TFs
72 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy